Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq47 134 1e-26 seq23 134 1e-26 seq45 93.3 4e-14 >seq47 Length=1968370 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | || |||||| || | || || || |||||||||||||| || Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||||||||||| || || || |||| |||||||||||||| ||||| Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||||||| ||| || || || | |||| ||||| | || || Sbjct 80958 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACT 81017 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || |||||||||||||| || ||||| |||||||| Sbjct 81018 TCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || |||||||||||||| | ||||| |||||||| ||| Sbjct 81090 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGTTGT 81149 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || |||| ||||||||||| || || || ||||| |||||||| ||| || Sbjct 81150 TTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTG 81209 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| | | |||||| || | ||| | || || ||||| Sbjct 81210 GACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTTCCGGTA 81269 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 81270 AGTGTCTTGACGAAGATCTGCATG 81293 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| |||||||| ||||| || || ||| || |||||| Sbjct 80628 ACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCG 80687 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| |||||||| || || || || ||||| || || || Sbjct 80688 AGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGG 80747 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | |||| || || | || | |||||||| | || | || || Sbjct 80748 ATCTTGGCTTTCACATTATCGATCGTATCAGATGAT-TCGACCTCTAATGTTATAGTCTT 80806 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || |||||||| |||||| Sbjct 80807 GCCTGTCAAGGTCTTGACAAAAATTTGCATG 80837 >seq23 Length=2864373 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||||||||||||||| | |||||| ||||||| Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| || ||||| ||||||||||||||| Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | || | | ||| | ||| ||||||| ||| | || ||| Sbjct 1571660 ATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTG 1571601 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 1571600 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| || || |||||||| || | |||||| ||| || Sbjct 1572008 ACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1571949 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | |||||||||||||| || ||||| || |||||||||||| Sbjct 1571948 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1571889 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | ||||| | ||| | ||| || |||| ||| | || ||| Sbjct 1571888 ATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTG 1571829 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || ||||||||||| Sbjct 1571828 CCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 125 bits (138), Expect = 6e-24 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||||||| | ||||| ||| || | Sbjct 1571551 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCA 1571492 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| ||||||| ||||||||||| ||||| ||||||||||||||| || Sbjct 1571491 ACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAA 1571432 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || || | |||| | ||| | |||||| || | || | || |||| Sbjct 1571431 TCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGC 1571372 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || || || || |||||||||||| Sbjct 1571371 CGGTGAGGGTCTTGACGAAAATCTGCATG 1571343 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || || ||||| ||| | ||||| |||||||| Sbjct 1572235 CAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGA 1572176 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| ||||||||||| || ||||| || |||||||||||| | Sbjct 1572175 GCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGA 1572116 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || || | ||| | | ||| | ||| ||||| | || | || |||| Sbjct 1572115 TCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTGC 1572056 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || ||||||||||| Sbjct 1572055 CGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| ||||| |||||||| || | || || ||||| | Sbjct 1572463 CAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAA 1572404 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| ||||||| |||||||| || ||||| |||||||||||||| || Sbjct 1572403 GCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAA 1572344 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || || | || | || ||| | ||| ||||||| ||| | || |||| Sbjct 1572343 TCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGC 1572284 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || || ||||| |||||||| Sbjct 1572283 CAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 >seq45 Length=2374188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 249/376 (66%), Gaps = 25/376 (7%) Strand=Plus/Plus Query 44940 TGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCA 44999 ||||||| || ||||| || |||||||| | || ||| | ||||||||||| |||||| Sbjct 1436261 TGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGTGACGAAGGTCTCCACACCG 1436320 Query 45000 ACTTTGCCTGCCTC---TACTATAATA----CGAG-AG--TCGATCAAAAGTTGGACGCG 45049 ||||||| || ||| | || || | || || || ||| || || | Sbjct 1436321 ACTTTGCTTGTCTCCTTTTCTCGCATCTCCGCAAGCAGCCTCCATC------TGAGCGTG 1436374 Query 45050 CCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAG 45109 || | || || || ||| || || | ||||| | ||| || | | Sbjct 1436375 TCCTCGGT-------ATCATCCGCGAGGCAGTCGAGATCGAAAAGGAGTTCCTGACCACC 1436427 Query 45110 GCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTT 45169 ||| |||||| | || | || |||||||||| | | ||| | | |||||||||||| Sbjct 1436428 GCTTTGCCCGTCGCTCTGATCGGCATGAACGCGACTCTCATGTGCCAATACATTGAGTTT 1436487 Query 45170 GTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCC 45228 ||||| || ||||| |||||| | | | ||| |||| | ||| | || ||||| Sbjct 1436488 GTCGCTGACCGTCTCCTCGTCTCGCT-CGGCATCGACAAGTTCTACAAGGCTACCAACCC 1436546 Query 45229 ATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGT 45288 ||||| |||||| ||| || || | ||||||| || || || |||||||| || || Sbjct 1436547 CTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAACTTCTTTGAGAAGCGTGT 1436606 Query 45289 CGGCGAATACAAGCGT 45304 | || ||| ||||| Sbjct 1436607 CTCTGATTACCAGCGT 1436622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830140921908