Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23 138 1e-27 seq47 111 2e-19 seq49 82.4 9e-11 seq46 82.4 9e-11 seq6 82.4 9e-11 seq1 82.4 9e-11 >seq23 Length=2864373 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||||||||| |||||||||| ||||| || | || || Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || ||||| ||||||||||| | || | || ||||||||| | Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || |||| || | | || |||| ||| || || |||| ||||| || ||| Sbjct 1571660 ATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTG 1571601 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| |||||||||||||| Sbjct 1571600 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || | || || || |||| || |||||||| ||||| || Sbjct 1572447 CTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAA 1572388 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| || || || |||| | Sbjct 1572387 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 1572328 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||| ||| || || |||| ||||| || ||||| || | ||||| || Sbjct 1572327 CTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGAC 1572268 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 1572267 AAAGATCTGCAT 1572256 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || |||||| || || ||||| |||| ||||| || | || || Sbjct 1572008 ACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1571949 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| | Sbjct 1571948 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1571889 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || || | | | | | ||| || || || |||| |||||||| ||| Sbjct 1571888 ATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTG 1571829 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || ||||| Sbjct 1571828 CCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || |||||||| || | || || || | Sbjct 1572243 ACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCC 1572184 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 1572183 ATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 1572124 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || || || | | | | || ||| || || || || | || || Sbjct 1572123 GTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAAT 1572064 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || |||||||| || || || ||||| Sbjct 1572063 GGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 2855525 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 2855466 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 2855465 CTATCCGAG 2855457 >seq47 Length=1968370 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||||| ||| |||||||||||||||||| || | || |||||| | Sbjct 80621 ACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCC 80680 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||| ||||| | ||| | || || || Sbjct 80681 GTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTT 80740 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || ||| | | | | ||| || ||||| || || | || || Sbjct 80741 ATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTAT 80800 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || | ||||| ||||| |||||||| Sbjct 80801 AGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | ||| |||| ||||||||||| || ||||||||||| ||||| || | Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || || || || || |||||||| || | || Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||||| | ||| | || | |||| | | | ||||| |||||| || Sbjct 80958 ATGCCTTCCTTGT-CTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAAC 81016 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||| || || ||||| || || ||||| |||||||| ||||| Sbjct 81017 TTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 >seq49 Length=1681262 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 1675122 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 1675063 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 1675062 CTATCCGAG 1675054 >seq46 Length=2048726 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 16265 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 16206 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 16205 CTATCCGAG 16197 >seq6 Length=208146 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 37602 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 37661 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 37662 CTATCCGAG 37670 >seq1 Length=4845341 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 1590736 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 1590795 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 1590796 CTATCCGAG 1590804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 1615930 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 1615989 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 1615990 CTATCCGAG 1615998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817249761720