Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq23 122 6e-23 seq47 116 2e-21 >seq23 Length=2864373 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| |||||||| ||||| || ||| | || Sbjct 1571555 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCT 1571496 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||||||||| || || ||||| |||||||| || || | || ||||||||| Sbjct 1571495 TCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 1571436 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | || || |||| || ||||| || | |||||||| Sbjct 1571435 TGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTC 1571376 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || || |||||||| Sbjct 1571375 TTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1571344 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| || | |||| || ||||| ||||||||||| || Sbjct 1572026 CCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 1571967 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||||||||| ||||||||||| || Sbjct 1571966 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1571907 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | || | || || || | || || || Sbjct 1571906 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACT 1571847 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| | || || || || |||||||| Sbjct 1571846 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 109 bits (120), Expect = 4e-19 Identities = 171/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 34146 TGCAGATTTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCT 34205 ||||||||| | || ||||| || || | || || || || | || || || | Sbjct 1572496 TGCAGATTTAG---AAACCGCCACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTT 1572440 Query 34206 GTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCC 34265 | ||||||||||| || ||| ||| |||| || | ||||||||| || || ||||| | Sbjct 1572439 GGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGC 1572380 Query 34266 GCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCG 34325 |||||||||| || | || ||||||||| ||||| ||||| | | | || | Sbjct 1572379 GCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGG 1572320 Query 34326 AATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCT 34385 | || | ||| || || || | ||||| || ||||| || | || || |||||||||| Sbjct 1572319 AGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCT 1572260 Query 34386 GCAT 34389 |||| Sbjct 1572259 GCAT 1572256 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || ||| || || |||||||| || || Sbjct 1571798 CCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 1571739 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || ||||| ||||||||||| || Sbjct 1571738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1571679 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | ||||| |||| ||| || || Sbjct 1571678 ATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACC 1571619 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || | || || |||||||| ||||| Sbjct 1571618 TCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||||||||| || ||| | || || | ||||||||| || || Sbjct 1572218 TCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 1572159 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | | ||||||||| ||||| ||||| | || Sbjct 1572158 ATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTT 1572099 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||| || | || || || || | || ||||| |||||||| || || || || Sbjct 1572098 TCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACG 1572039 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 1572038 AAAATCTGCAT 1572028 >seq47 Length=1968370 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| | | |||||||| || | || ||| || || ||||||||||| || Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| || || || || |||||||| || || Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | | || | || | |||||| || Sbjct 80958 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACT 81017 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || |||||||| ||||| ||||||||||||||||| Sbjct 81018 TCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071807065440