Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq47 113 1e-19 seq45 86.0 1e-11 >seq47 Length=1968370 Score = 113 bits (124), Expect = 1e-19 Identities = 397/608 (65%), Gaps = 19/608 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| | ||| | | ||||| ||||| |||||||| | ||| | || || | Sbjct 706941 GATTTCGGCTACAACTACTTTGGCTTCAAGACGCTGGAACGTGCTTATTTGCTGAAGCTC 706882 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | |||||||| | || ||| ||||||||||||||||| |||||||| || |||||| Sbjct 706881 AACGGCAAGATTGCCGAGCGACCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTCAC 706822 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 || || || || ||| | ||||| |||| | ||| ||| | | || Sbjct 706821 GGCGAGGATATCGAAGGCGCCATTGAGACTTACAACCTCATGTCTGAGAAATACTTTACC 706762 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTA-CCGTCAACAATCAGCTGAGCTCGTGCTT 249047 || || | || || || ||||||||||||| || || | |||||| || ||||| Sbjct 706761 CACGCGAGTCCCACCCTGTTCAACGCCGGTACCCCTCGTC-CGCAGCTGTCGTCCTGCTT 706703 Query 249048 TCTTCTTG-CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGG 249106 | || ||| ||||| | || || || | || ||||| ||||| || || ||| Sbjct 706702 T-TTGTTGACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTGAAAATTTGCT 706644 Query 249107 CGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGG 249166 | | ||||| || |||||| || ||||||||| | || | | ||||| || | Sbjct 706643 CCCAAATTTCCAAGACCGCGGGTGGCATCGGTCTCAACATCCACCAGATCCGGGCTTCCG 706584 Query 249167 GTTCGTACATCAAAGGTACAAATGGGGTCAGT--GATGGTATCGTACCCCTCCTTCGATG 249224 | ||||||||| ||||| ||| ||| | | | || ||||| || | || || | Sbjct 706583 GCTCGTACATCGCTGGTACCAAT--GGTTATTCCAACGGCATCGTGCCTATGCTCCG-CG 706527 Query 249225 CTTTGAGT-CCAC----CGCCAGGTTCATCAACCAGGC--CGGGCGCCGAAAGGGGTCGT 249277 || | | ||| ||| | || ||||| ||| | ||||| ||| | | Sbjct 706526 TTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGCAACAAGCGCC---CGGGTGCTT 706470 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| || | || |||||| | ||| | || |||||||||| | |||| Sbjct 706469 TCGCCATCTACCTCGAGCCCTGGCACCCGGATGTGTTCTCGTTCCTGGACCTCCGCAAGA 706410 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 ||| |||||| ||| | | ||||||||||| ||||| | | | ||| || | || Sbjct 706409 ACACCGGCAAGGAGGAGAATCGCGCGCGTGACCTGTTCTATGCCTTATGGATCCCTGATC 706350 Query 249398 TGTTCATG 249405 | |||||| Sbjct 706349 TTTTCATG 706342 >seq45 Length=2374188 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 |||||||| ||||||||||| ||||||||||| ||||||||||| | ||||| |||||| Sbjct 1436600 TTCTCAAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATAAAGTCGAAGGGGTTG 1436541 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTTG 157393 | ||||| | ||||||| || ||| | || ||| || ||||||| Sbjct 1436540 GTAGCCTTGTAGAACTTGTCGATGCCGAGCGAGACGAGGAGACGGTCAGCGACAAACTCA 1436481 Query 157394 ATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGG--AAGCG 157445 ||||| | |||| || || | || ||||| || |||||||| ||||| Sbjct 1436480 ATGTATTGGCACATGAGAGTCGCGTTCATGCCGATCAGAGCGACGGGCAAAGCG 1436427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765725876032