Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq45 95.1 2e-14 >seq45 Length=2374188 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902 ||||| || ||||||||||||| | ||||| | || ||||| | ||| ||| | Sbjct 1436111 TTCCCTGC-ATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGAT-CTCCTCAA--ACGGT 1436166 Query 101903 TTG---GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || || | | ||||| |||||||| || || || |||||||| ||| | Sbjct 1436167 GTGTTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCG 1436226 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 || || ||||| || ||| ||||||| | ||| | |||||||||| || | | ||| Sbjct 1436227 TTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAAC 1436286 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 ||| |||| || | ||||||||||| || ||||||||| || Sbjct 1436287 GAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCTTG 1436330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583378726795