Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq47 232 8e-56 seq45 100 4e-16 >seq47 Length=1968370 Score = 232 bits (256), Expect = 8e-56 Identities = 947/1477 (64%), Gaps = 37/1477 (3%) Strand=Plus/Plus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTA-TCAAATGGAT 62745 || ||||| |||||||||| | || || | |||| || ||||| | |||||||| | Sbjct 705752 TAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT--CGGGCGAGTCAAATGGGT 705809 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | ||||| || || || | || | ||||| | |||||| || | ||| | Sbjct 705810 AGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGAC 705869 Query 62806 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865 | | || ||| |||||||| || | |||||| || || || || ||||| || || | Sbjct 705870 GCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTA 705929 Query 62866 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGC 62918 || | | |||| | ||||| ||||| | || || | |||||||| |||| Sbjct 705930 AGTTGCGCGTCACAA---CCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGC 705986 Query 62919 CCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTA 62978 ||| | ||||| || ||| || | | |||| ||| || || ||||| || | Sbjct 705987 GATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCC 706045 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | || | | ||||| || || ||||| || |||||||| || || || || Sbjct 706046 GGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTC 706105 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 || || || || ||||||||| ||||| || || ||||| || ||| || || Sbjct 706106 TGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCG 706165 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT 63157 | || | || | || || | ||||| | || | ||||| | | ||| | Sbjct 706166 GTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGACAAC----TTGGCGCG 706220 Query 63158 C----CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 | | ||| | ||||||| || |||| || |||| || ||||| || | || Sbjct 706221 CGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGT 706280 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 | | || ||| || || | ||| ||| || || | || | || || | Sbjct 706281 GAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCT 706340 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCG 63332 |||| || |||||||| ||||| | || ||| || || || | | | || ||||| Sbjct 706341 TCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCGCGCGATTCTCCTCC 706399 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || || ||||| || || ||||||| | | ||| | ||||| || || | | Sbjct 706400 TTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGG 706459 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | | || || || ||||| || || ||||| | || | ||| |||||| Sbjct 706460 TAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTA 706519 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || ||||| | | ||| || | || ||||| || |||||||||||| | ||| || Sbjct 706520 TTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTAC 706579 Query 63513 CCTCCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGA 63568 || || || || || | ||| ||||| || || || || | || || Sbjct 706580 GAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGA 706635 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 ||| | ||| ||| | || |||||||||||||| || ||| || ||||| | Sbjct 706636 AATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGT 706695 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 | | ||| ||| |||| || |||||| || || || || || | ||| ||| Sbjct 706696 CAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACT 706755 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 ||||| ||||| |||| ||||| | || ||||| |||||||| || || ||||| Sbjct 706756 CGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATC 706815 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | ||||| || || || |||||||| ||||||||||| |||| || |||| || Sbjct 706816 CTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTT 706875 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63868 | ||| | |||| ||| || | ||||| || || || ||||| |||||||| Sbjct 706876 GCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCC 706935 Query 63869 AAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC 63928 || || || ||||| || || | || || || || || || ||| ||| | Sbjct 706936 GAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTCATAATGATAGC 706995 Query 63929 CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63988 || | || | || |||| || || |||| ||||| | |||| Sbjct 706996 GTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTGATATAGCCATG 707055 Query 63989 TAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGTGTAGATTTGATATGG 64047 || || || ||||| | | | | || || || ||||| ||||| || || || | || Sbjct 707056 CAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAGGTTGGACACGG 707114 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 64107 | || | || || || |||||||| || ||||| | || || | || ||| | | Sbjct 707115 CGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATATGCAGCTGTCT 707174 Query 64108 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 ||||||| || |||||| ||| || || || || || Sbjct 707175 CGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 100 bits (110), Expect = 4e-16 Identities = 221/328 (67%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||||| ||| |||| | || ||| | || || | |||||| |||||||||||| Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||| | || | |||||||| ||||| ||||| || |||||||| || | || Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT-- 33987 || | ||||| ||||| | || || ||||| | || || || || || || |||| Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808 Query 33988 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTT 34043 ||||| ||||| || || | ||||| ||||| || || || |||| || Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751 Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 || | |||||| || ||| || || | ||| | |||||| | ||||| || || Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGA 34131 || | ||||| || ||||| | ||||| Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||| ||||| | || | ||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||| || |||||||| ||||| || || || || || ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-A 33759 ||| || || || |||||||| |||| | | ||| || | | || | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCGTT-TGAGGAGA 1436153 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817214236720