Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq47 214 2e-50 seq45 89.7 7e-13 >seq47 Length=1968370 Score = 214 bits (236), Expect = 2e-50 Identities = 943/1477 (64%), Gaps = 37/1477 (3%) Strand=Plus/Plus Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGAT 65538 || ||||| || ||||||| | || || | |||| || | ||| | |||||||| | Sbjct 705752 TAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT--CGGGCGAGTCAAATGGGT 705809 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | ||||| || || || | || | ||||| | |||||| || | ||| | Sbjct 705810 AGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGAC 705869 Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 | | || ||| |||||||| || | |||||| || || || || ||||| || || | Sbjct 705870 GCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTA 705929 Query 65659 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGC 65711 || | | |||| | ||||| ||||| | || || | |||||||| |||| Sbjct 705930 AGTTGCGCGTCACAA---CCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGC 705986 Query 65712 TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 ||| | ||||| || ||| || | | |||| ||| || || ||||| || | Sbjct 705987 GATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCC 706045 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | | || | | ||||| || || ||||| || |||||||| || || || || Sbjct 706046 GGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTC 706105 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 || || || || ||||||||| ||||| || || ||||| || ||| || || Sbjct 706106 TGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCG 706165 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT 65950 | || | || | || || | ||||| | || | ||||| | | ||| | Sbjct 706166 GTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGACAAC----TTGGCGCG 706220 Query 65951 CTT----TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 66006 | ||| | ||||||| | |||| || |||| || ||||| || | || Sbjct 706221 CGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGT 706280 Query 66007 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 66066 | || || ||| || || | ||| ||| || || | || | || || | Sbjct 706281 GAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCT 706340 Query 66067 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCG 66125 |||| || |||||||| ||||| | || ||| || | || | | | || ||||| Sbjct 706341 TCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCGCGCGATTCTCCTCC 706399 Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || || ||||| || || ||||||| | | ||| ||||| || || | | Sbjct 706400 TTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGG 706459 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || ||||| | | | || || || ||||| || || ||||| | || | ||| |||||| Sbjct 706460 TAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTA 706519 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || ||||| | | ||| || | || || ||||| ||||||||| || | ||| || Sbjct 706520 TTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTAC 706579 Query 66306 CTTCCACTTGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGA 66361 || || || || || | ||| ||||| || || || || | || || Sbjct 706580 GAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGA 706635 Query 66362 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 66421 ||| | ||| ||| | || ||||||||||| || || ||| ||| ||||| | Sbjct 706636 AATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGT 706695 Query 66422 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 66481 | | ||| ||| |||| || ||||| || || || || || | ||| ||| Sbjct 706696 CAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACT 706755 Query 66482 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 66541 ||||| ||||| |||| ||||| | || ||||| |||||||| || || ||||| Sbjct 706756 CGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATC 706815 Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 66601 | ||||| || || || |||||||| ||||||||||| |||| || | ||||| Sbjct 706816 CTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTT 706875 Query 66602 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661 | ||| | |||| ||| || | ||||| || || || ||||| |||||||| Sbjct 706876 GCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCC 706935 Query 66662 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 66721 || || || ||||| || || | ||||| || || || || ||| | | | Sbjct 706936 GAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTCATAATGATAGC 706995 Query 66722 CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 66781 || | || | || |||| || || |||| ||||||| |||| Sbjct 706996 GTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTGATATAGCCATG 707055 Query 66782 TAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCTTTGTGTAGATTTGATACGG 66840 || || || ||||| | | | | || || || ||||||||||| || || || |||| Sbjct 707056 CAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAGGTTGGACACGG 707114 Query 66841 CTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 66900 | || | ||| || | |||||||| || ||||| | || || | || ||| | | Sbjct 707115 CGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATATGCAGCTGTCT 707174 Query 66901 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 66937 ||||||| || |||||| ||| || || || || || Sbjct 707175 CGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| ||||| ||||| | || | |||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || |||||||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-A 36335 || || || || || ||||| |||| | | ||| || ||| | | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCA-AACACACCGTTTGAGGAGA 1436153 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 36366 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172396869160