Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq45 116 4e-21 seq47 111 2e-19 seq23 111 2e-19 >seq45 Length=2374188 Score = 116 bits (128), Expect = 4e-21 Identities = 298/445 (67%), Gaps = 13/445 (3%) Strand=Plus/Plus Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671 ||||| || ||| |||| || |||||| ||||| ||| | || || || || ||| Sbjct 1436170 TTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTT 1436229 Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 || | || |||| |||| || | ||| | | ||||| || || || || |||||||| Sbjct 1436230 GCCTCCATCTTTTGGCTCAAGAAGCGTGGTC-TGATGCCTGGTCTGACTTTCAGCAACGA 1436288 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATA--ATAC 52787 | | || ||||| |||||||| | ||||| || ||||| ||| | | || | || Sbjct 1436289 GCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCGCATCT 1436348 Query 52788 GCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGA 52847 ||| ||| | | ||| ||| | || | || | ||||| ||||| Sbjct 1436349 CCGC----AAGCAGCCTC--CATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGA 1436402 Query 52848 CATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGAC 52907 || ||||| ||||| | || |||||| ||||| | || | |||||||||||||| Sbjct 1436403 GATCGAAAAGGAGTTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGAC 1436462 Query 52908 CATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGC- 52966 | |||||| | ||||| |||||||| || ||| | || | | |||||| || | Sbjct 1436463 TCTCATGTGCCAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGG-CATCG 1436521 Query 52967 CGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCA 53026 || | ||| || || |||||||| |||||| ||| || || ||| |||||| Sbjct 1436522 ACAAGTTCTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCA 1436581 Query 53027 AAACAAACTTTTTCGAGAGACGTGT 53051 | || ||||| || |||| ||||| Sbjct 1436582 AGACCAACTTCTTTGAGAAGCGTGT 1436606 >seq47 Length=1968370 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| ||||| |||| || || || | ||| || || ||||||||||| || || Sbjct 80837 GCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGA 80896 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || ||| |||||||||| |||||||| ||||| Sbjct 80897 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGG 80956 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | || | || | | || | |||||| | | || | Sbjct 80957 AATGCCTTCCTTGTC-TTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAA 81015 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | ||||||||||||| || || || || || |||||| Sbjct 81016 CTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 81065 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || || || | ||| ||||| |||||||| || || || | Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || || ||| |||| ||||| || || || || || Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || ||| | | || | || || | | || ||| Sbjct 80730 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACC 80789 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| ||||| || || || || |||||||| Sbjct 80790 TCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 >seq23 Length=2864373 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || || || ||||||||||| ||||| | |||| || || Sbjct 1571781 AACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTC 1571722 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || |||||| |||| || || ||||| || ||||| ||||| || ||||| Sbjct 1571721 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 1571662 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || || | | || | | ||||| | ||| ||||| | ||| | ||||| Sbjct 1571661 GATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| ||||| || || || || ||||||||| Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCATA 1571571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || |||||| |||| ||||| ||||| || ||||| || || || ||| Sbjct 1572182 TCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 1572123 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || || | | ||| | | ||| | | ||| ||||||| || | Sbjct 1572122 TCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATG 1572063 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| ||| || ||||| || |||||| Sbjct 1572062 GTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATA 1572027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || || | |||||||| || || ||||| || || | |||| ||||| Sbjct 1572009 AACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1571950 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || ||||| | || ||||| ||||| || ||||| || || || ||||| Sbjct 1571949 AAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTG 1571890 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || || | | ||| | | ||| | | ||| || || | ||| | ||||| Sbjct 1571889 GATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTT 1571830 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||| || || ||||| || |||||| Sbjct 1571829 GCCGGTCAAGGTCTTGACGAAAATCTGCATA 1571799 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| |||||| | |||| ||||| | ||| || ||| Sbjct 1571540 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCA 1571481 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || |||||||| ||||| ||||| || ||||| || || || || Sbjct 1571480 GCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTTCTGCTTG 1571421 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||||| | ||| || |||| || | ||||||||||| | || Sbjct 1571420 ACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTC 1571361 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1571360 TTGACGAAAATCTGCAT 1571344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063696160800