Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq47 221 2e-52 seq45 104 3e-17 >seq47 Length=1968370 Score = 221 bits (244), Expect = 2e-52 Identities = 1317/2091 (63%), Gaps = 38/2091 (2%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 || || ||||||||||| || || || ||||| |||| || || || ||||||||| Sbjct 705137 GTGCGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTC 705196 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || |||||| | | | || || | ||| ||| || | | ||| || || || || Sbjct 705197 GTCAGTTTGCCAAAGTTGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCAATA 705256 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 ||||| || | ||| || ||||| | ||||| ||| | | |||||| | || Sbjct 705257 AAGGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTGCGAGAGTTCCCATACGGTC 705316 Query 78928 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCT 78984 || || | || | | ||| || | || | | ||| ||||| ||| || Sbjct 705317 TTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCATTGTCG 705376 Query 78985 GCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 79044 | ||| ||| | ||||||| || || ||||| | | || | | | | || Sbjct 705377 GACATGATCATGTTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTGAGC 705436 Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 | ||| ||||| | ||| ||||| || | ||| || | || ||||| | || Sbjct 705437 AACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAGGTTGGAC 705496 Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 || || ||||| | ||||||| |||| ||| || | |||||| || || ||||| Sbjct 705497 GTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCGGCATG 705556 Query 79165 GGTGCCACCAATAAACTATTTCT-AAGACCGTATGATCTGATTTTATCTTTTAGAGATTC 79223 |||||||||| | || | ||| | || || | || || | || || | | Sbjct 705557 GGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCA-ATCTTGGCCTTGAGGGCAGC 705615 Query 79224 CCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT 79283 ||| ||||| ||||| | || || ||||| | ||||| || | | || || Sbjct 705616 CCAGTCCCATAGATCGGTGGGTGTCACGTTCCAGAAGTCATACTGCAAGACGCCCTTGGA 705675 Query 79284 AGCGTATGAT-CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCG 79342 || | | | ||| ||| || | || || || | | | || | || | Sbjct 705676 CGC-TGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTGGAAG 705734 Query 79343 CCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCT 79401 |||| | || | | || ||||| || || |||| | ||||| | |||| || || Sbjct 705735 CCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTG-GCCTCG 705793 Query 79402 AGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAAT 79460 ||| | |||||||| || | | ||||| || || || | || | ||||| | Sbjct 705794 -GGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAG 705852 Query 79461 ACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAAT 79520 |||||| || | ||| | | | || || |||||||| || | |||||| || || || Sbjct 705853 ACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGAT 705912 Query 79521 ATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAA 79580 || ||||| || || | || | | || ||||| ||||| | | || | || Sbjct 705913 GTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTTGGAA 705972 Query 79581 ATCAAA----TCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAA 79636 |||||| ||| ||| | ||||| || ||| || | | |||| ||| || | Sbjct 705973 ATCAAACACTTCGCGATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATA 706031 Query 79637 CGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAA 79696 | ||||| || | | | | || | | || || || ||||| || || ||||| | Sbjct 706032 CAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGA 706091 Query 79697 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACG 79756 | || || || || || || || || ||||||||| ||||| || || ||||| | Sbjct 706092 TCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGG 706151 Query 79757 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATT 79815 | ||| || || | || | || | || || | ||||| | || | ||||| | Sbjct 706152 GGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGACA 706210 Query 79816 ATAGACTTGTATCTCTT----TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 79871 | |||| | | ||| | ||||||||| || | || |||| || Sbjct 706211 A----CTTGGCGCGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTC 706266 Query 79872 TCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATC 79931 ||||| || |||| | || || |||| || || | ||| ||| || |||| Sbjct 706267 GCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATT 706326 Query 79932 ATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGG 79990 || | || || ||||| || |||||||| ||||| | || ||| || || || | | Sbjct 706327 CTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCG 706385 Query 79991 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 80050 | || |||||| || || || ||||| || || ||||||| | | ||| | | Sbjct 706386 CGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGT 706445 Query 80051 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGT 80110 |||| || || | ||| ||||| | | | ||||| || ||||| || || ||||| | | Sbjct 706446 GCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACAT 706505 Query 80111 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 80170 | | ||| |||||||| ||||| | | ||| || | || || ||||| |||||||| Sbjct 706506 AGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGG 706565 Query 80171 TCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCC 80226 | || | ||| || || || || || || | ||| ||||| || || Sbjct 706566 TACCAGCGATGTACGAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCA 706621 Query 80227 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTA 80286 || || | || || ||| | ||| ||| | || ||||||||||| || || | Sbjct 706622 CCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAA 706681 Query 80287 TCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 80346 || || ||||| | | | ||| ||| |||| || ||||| || || || || Sbjct 706682 TCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTG 706741 Query 80347 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 80406 || | ||| ||| ||||| ||||| |||| ||||||| || ||||| |||||||| Sbjct 706742 AACAGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATG 706801 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGT 80466 || ||| |||||| ||||| || || || |||||||| ||||||||||| ||| Sbjct 706802 GCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGT 706861 Query 80467 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCA 80526 | || | |||||| || | |||| ||| |||| ||||| || || || ||| Sbjct 706862 CGCTCGGCAATCTTGCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCA 706921 Query 80527 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATAT 80586 || |||||||| || || || ||||| || || | ||||| || || || Sbjct 706922 AAGTAGTTGTAGCCGAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTC 706981 Query 80587 TTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGA 80646 || ||| | | | ||| | || | || |||| || || |||| ||| Sbjct 706982 TTCATAATGATAGCGTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGA 707041 Query 80647 TTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGTG 80705 || | |||| || || || ||||| | | | | || || || ||||| ||||| Sbjct 707042 TTGATATAGCCATGCAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTG 707100 Query 80706 TAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACA 80765 || || || ||||| || | || || | |||||||| || ||||| | || || Sbjct 707101 CAGGTTGGACACGGCGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCAT 707160 Query 80766 AGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 80816 | || ||| | |||||||| || |||||| ||| || || || || || Sbjct 707161 ATATGCAGCTGTCTCGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| ||||| ||||| | || || |||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || |||||||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-A 50137 ||| || || || || ||||| ||||| | | ||| || ||| | | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCA-AACACACCGTTTGAGGAGA 1436153 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 50168 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/328 (67%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||||| ||| |||| | || ||| | || || | |||||| |||||||||||| Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||| | || | |||||||| ||||| ||||| || |||||||| || | || Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT-- 50365 || | ||||| ||||| | || || ||||| | || || || || || || || | Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808 Query 50366 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAA---AATGTTTTTCGTTGGGTGTT 50421 ||||| ||||| || || | ||||| |||| || | | || |||| || Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 || | |||||| || ||| || || | ||| | |||||| | ||||| || || Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691 Query 50482 GCCTCTGCCTTTTTATACATATTCCAGA 50509 || | ||||| || ||||| | ||||| Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268360060360