Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq47 104 2e-17 seq23 82.4 6e-11 >seq47 Length=1968370 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||| | ||| ||||||||| | |||||| || ||| Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| || | || ||||| ||||| || | |||||||| || | ||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||| || | | | || || | ||||| Sbjct 80730 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACC 80789 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||| || || || | || || |||||||||||||| Sbjct 80790 TCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| || ||||| || | |||||||| || Sbjct 81066 CCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAG 81125 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||||||||||||| |||| ||||| || || | ||| Sbjct 81126 AGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 81185 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| ||||| || ||| ||||| | |||||| Sbjct 81186 ATGCCTTCCTTGTC-CTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGAC 81244 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| |||||||| || || || || || || ||||| Sbjct 81245 TTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 >seq23 Length=2864373 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| |||| |||||| || | ||||||||||| Sbjct 1571570 CCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 1571511 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||| || ||||| ||||| || | ||||| ||||| | || Sbjct 1571510 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGA 1571451 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| || ||||| | | | | |||| || |||||| Sbjct 1571450 ATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACT 1571391 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || ||||| || || || || ||||| ||||| || Sbjct 1571390 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369372250842