Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq47 203 4e-47
seq45 95.1 2e-14
>seq47
Length=1968370
Score = 203 bits (224), Expect = 4e-47
Identities = 946/1488 (64%), Gaps = 23/1488 (2%)
Strand=Plus/Plus
Query 71425 GCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTC 71483
||||| | || ||| || ||||| || || |||| | ||||| | |||| ||
Sbjct 705734 GCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT-- 705791
Query 71484 CGGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542
||||| | |||||||| || | | ||||| || || || | || | || || |
Sbjct 705792 CGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTA 705851
Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602
|||||| || | || | | | || || |||||||| || | |||||| || || |
Sbjct 705852 GACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGA 705911
Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662
| || ||||| || || | || | | || ||||| ||||| | | || | |
Sbjct 705912 TGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTTGGA 705971
Query 71663 AATCAAA----TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAA 71718
||||||| || | ||| | ||||| | ||| || | | |||| ||| ||
Sbjct 705972 AATCAAACACTTCGCGATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCAT 706030
Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778
|| ||||| || | | | || || | | || || || || ||||| || ||||||
Sbjct 706031 ACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTG 706090
Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838
|| || || || || || || || || ||||||||| ||||| || || || ||
Sbjct 706091 ATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAG 706150
Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTAT 71897
|| ||| || || | || | || | || || | ||||| | || | ||||| |
Sbjct 706151 GGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGAC 706209
Query 71898 TATATTCTTGTATCTCTT----TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953
| |||| | | ||| | ||||||||| || | || |||| |
Sbjct 706210 AA----CTTGGCGCGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCT 706265
Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013
| ||||| | | || | || || ||| | || || | ||| ||| || ||||
Sbjct 706266 CGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCAT 706325
Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTG 72072
|| | || || ||||| || |||||||| ||||| | || ||| || || || |
Sbjct 706326 TCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGC 706384
Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132
| | || |||||| || || || ||||| || || ||||||| | | ||| |
Sbjct 706385 GCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGG 706444
Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192
||||| || || | ||| ||||| | | | ||||| || ||||| || || ||||| |
Sbjct 706445 TGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACA 706504
Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252
|| | ||| |||||||| ||||| | | ||| || | || || ||||| |||||||
Sbjct 706505 TAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTG 706564
Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCT 72312
|| || | ||| || || || || || | | || ||||| || || ||
Sbjct 706565 GTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCGATGCCACCC 706624
Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372
|| | || || ||| | ||| ||| | || ||||||||||| || || |||
Sbjct 706625 GCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCC 706684
Query 72373 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432
||| ||||| | | | ||| ||| |||| || ||||| || || || || ||
Sbjct 706685 TCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAAC 706744
Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492
| ||| ||| ||||| ||||| |||| ||||||| || ||||| |||||||| ||
Sbjct 706745 AGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCG 706804
Query 72493 GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552
||| |||||| || || || || || |||||||| ||||| ||||| ||||
Sbjct 706805 CCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGC 706864
Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612
|| | |||||| || | |||| ||| || | ||||| || || || |||||
Sbjct 706865 TCGGCAATCTTGCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAG 706924
Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTG 72672
|||||||| || || || ||||| || || | || || || || || ||
Sbjct 706925 TAGTTGTAGCCGAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTC 706984
Query 72673 TTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 72732
||| ||| | ||| | || | || |||| || || |||| |||||
Sbjct 706985 ATAATGATAGCGTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTG 707044
Query 72733 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGTGTAG 72791
| |||| || || || ||||| | | | | || || || ||||| ||||| ||
Sbjct 707045 ATATAGCCATGCAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAG 707103
Query 72792 ATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT 72851
|| || ||||| || | || || || |||||||| || ||||| | || || |
Sbjct 707104 GTTGGACACGGCGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATA 707163
Query 72852 GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 72899
|| ||| | || ||||| || |||||| ||| || || || || ||
Sbjct 707164 TGCAGCTGTCTCGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211
>seq45
Length=2374188
Score = 95.1 bits (104), Expect = 2e-14
Identities = 219/328 (67%), Gaps = 9/328 (3%)
Strand=Plus/Minus
Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352
||||||| ||| |||| | || ||| | || || | ||| || ||||||||||||
Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928
Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412
||| | || | |||||||| ||||| ||||| || |||||||| || ||||
Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868
Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT-- 42470
|| | | ||| ||||| | || || ||||| | || || ||||| || || || |
Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808
Query 42471 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529
||||| ||||| || || | ||||| ||||| || || ||| || | |
Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751
Query 42530 TTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586
|| || |||||| || ||| || || | ||| | ||||| | ||||| || ||
Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691
Query 42587 GCTTCTGCCTTTTTATACATATTCCAGA 42614
|| | ||||| || ||||| | |||||
Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663
Score = 86.0 bits (94), Expect = 8e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || ||| ||| ||||| || || | || | |||||| || || ||
Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183
|| ||||| || |||||||| || |||||||| || || ||||| || ||||| |||||
Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-A 42242
||| || || || || ||||| |||| | | ||| || ||| | | | | | |
Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCA-AACACACCGTTTGAGGAGA 1436153
Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 42273
||||||| ||||| ||||||||||| ||
Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138788927240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |