Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq47 203 4e-47 seq45 95.1 2e-14 >seq47 Length=1968370 Score = 203 bits (224), Expect = 4e-47 Identities = 946/1488 (64%), Gaps = 23/1488 (2%) Strand=Plus/Plus Query 71425 GCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTC 71483 ||||| | || ||| || ||||| || || |||| | ||||| | |||| || Sbjct 705734 GCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT-- 705791 Query 71484 CGGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 ||||| | |||||||| || | | ||||| || || || | || | || || | Sbjct 705792 CGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTA 705851 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||||| || | || | | | || || |||||||| || | |||||| || || | Sbjct 705852 GACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGA 705911 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 | || ||||| || || | || | | || ||||| ||||| | | || | | Sbjct 705912 TGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTTGGA 705971 Query 71663 AATCAAA----TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAA 71718 ||||||| || | ||| | ||||| | ||| || | | |||| ||| || Sbjct 705972 AATCAAACACTTCGCGATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCAT 706030 Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 || ||||| || | | | || || | | || || || || ||||| || |||||| Sbjct 706031 ACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTG 706090 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 || || || || || || || || || ||||||||| ||||| || || || || Sbjct 706091 ATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAG 706150 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTAT 71897 || ||| || || | || | || | || || | ||||| | || | ||||| | Sbjct 706151 GGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGAC 706209 Query 71898 TATATTCTTGTATCTCTT----TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | |||| | | ||| | ||||||||| || | || |||| | Sbjct 706210 AA----CTTGGCGCGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCT 706265 Query 71954 CTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCAT 72013 | ||||| | | || | || || ||| | || || | ||| ||| || |||| Sbjct 706266 CGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCAT 706325 Query 72014 CATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTG 72072 || | || || ||||| || |||||||| ||||| | || ||| || || || | Sbjct 706326 TCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGC 706384 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | | || |||||| || || || ||||| || || ||||||| | | ||| | Sbjct 706385 GCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGG 706444 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || || | ||| ||||| | | | ||||| || ||||| || || ||||| | Sbjct 706445 TGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACA 706504 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 || | ||| |||||||| ||||| | | ||| || | || || ||||| ||||||| Sbjct 706505 TAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTG 706564 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCT 72312 || || | ||| || || || || || | | || ||||| || || || Sbjct 706565 GTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTGGATGTTGAGACCGATGCCACCC 706624 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 || | || || ||| | ||| ||| | || ||||||||||| || || ||| Sbjct 706625 GCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCC 706684 Query 72373 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 ||| ||||| | | | ||| ||| |||| || ||||| || || || || || Sbjct 706685 TCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAAC 706744 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492 | ||| ||| ||||| ||||| |||| ||||||| || ||||| |||||||| || Sbjct 706745 AGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCG 706804 Query 72493 GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552 ||| |||||| || || || || || |||||||| ||||| ||||| |||| Sbjct 706805 CCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGC 706864 Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612 || | |||||| || | |||| ||| || | ||||| || || || ||||| Sbjct 706865 TCGGCAATCTTGCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAG 706924 Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTG 72672 |||||||| || || || ||||| || || | || || || || || || Sbjct 706925 TAGTTGTAGCCGAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTC 706984 Query 72673 TTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 72732 ||| ||| | ||| | || | || |||| || || |||| ||||| Sbjct 706985 ATAATGATAGCGTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTG 707044 Query 72733 ACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGTGTAG 72791 | |||| || || || ||||| | | | | || || || ||||| ||||| || Sbjct 707045 ATATAGCCATGCAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAG 707103 Query 72792 ATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT 72851 || || ||||| || | || || || |||||||| || ||||| | || || | Sbjct 707104 GTTGGACACGGCGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATA 707163 Query 72852 GGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 72899 || ||| | || ||||| || |||||| ||| || || || || || Sbjct 707164 TGCAGCTGTCTCGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/328 (67%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||||| ||| |||| | || ||| | || || | ||| || |||||||||||| Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || | |||||||| ||||| ||||| || |||||||| || |||| Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT-- 42470 || | | ||| ||||| | || || ||||| | || || ||||| || || || | Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808 Query 42471 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529 ||||| ||||| || || | ||||| ||||| || || ||| || | | Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751 Query 42530 TTATT---CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 || || |||||| || ||| || || | ||| | ||||| | ||||| || || Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGA 42614 || | ||||| || ||||| | ||||| Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663 Score = 86.0 bits (94), Expect = 8e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| ||||| || || | || | |||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || |||||||| || |||||||| || || ||||| || ||||| ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-A 42242 ||| || || || || ||||| |||| | | ||| || ||| | | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCA-AACACACCGTTTGAGGAGA 1436153 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 42273 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138788927240