Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq45 136 6e-27 seq1 122 1e-22 seq49 120 5e-22 seq47 120 5e-22 >seq45 Length=2374188 Score = 136 bits (150), Expect = 6e-27 Identities = 293/433 (68%), Gaps = 19/433 (4%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || || || || ||||| |||||||| || || ||||| ||||||||| Sbjct 1436183 TGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCCATCTTTT 1436242 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || || ||||| || ||||| ||| |||||| | || || || | Sbjct 1436243 GGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGTG 1436302 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAG 125606 |||| || || ||| |||||||| ||| || || ||||| || ||| Sbjct 1436303 ACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCGCATCT---------CCGCA 1436353 Query 125607 TGCAG-ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 |||| |||| | ||| ||| || || | ||| || || ||| ||| | Sbjct 1436354 AGCAGCCTCCATC--TGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGAGATCGAAAA 1436411 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| || ||| | | || ||| |||| ||||||||| | || ||||| Sbjct 1436412 GGAGTTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGACTCTCATGTG 1436471 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGAT 125782 | | ||||| |||||||| || || ||||| || || | | | ||| || |||| | Sbjct 1436472 CCAATACATTGAGTTTGTCGCTGACCGTCTCCT---CGTCTCGCTCGGCATCGACAAGTT 1436528 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 ||||| || | || ||||| || || ||| || || || || |||| |||||||| Sbjct 1436529 CTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAA 1436588 Query 125843 CTTTTTCGAGAAG 125855 ||| || |||||| Sbjct 1436589 CTTCTTTGAGAAG 1436601 Score = 122 bits (134), Expect = 1e-22 Identities = 193/277 (70%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| |||||| || || || ||||| | |||||| ||||||| || Sbjct 1435665 TGGCAAATGTACAAGAAGGCTGTCGCTTCTTTCTGGACTGCGGAAGAGATCGATCTTTCG 1435724 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| | | |||||||||||| |||| | |||||| | ||||| ||||| Sbjct 1435725 AAGGATCAGAACGATTGGGAGAACAAAATGACCAAGGATGAGCGTTACTTTATCTCGCAT 1435784 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTC 125201 | | || ||||||||| | | ||||| ||||||||||| || || | ||| ||| Sbjct 1435785 GTGCTTGCTTTCTTTGCCAGTGCAGATGGCATCGTCAACGAGAACTTGGTCGAACGCTTC 1435844 Query 125202 TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAG 125261 | | || | || || || | |||||| ||||| ||||| |||||||||||| Sbjct 1435845 TGCAATGAAGTCCAGATCCCTGAAGCCAAGTGCTTCTACGGCTTCCAGATCATGATTGAG 1435904 Query 125262 AACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 ||| | ||| | || | || ||| |||| |||| Sbjct 1435905 AACATTCACGCTGAGACCTATTCTCTTTTGATCGACA 1435941 >seq1 Length=4845341 Score = 122 bits (134), Expect = 1e-22 Identities = 315/476 (66%), Gaps = 28/476 (6%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| |||||||| || || || ||||||||||||||| | |||| || | | || Sbjct 662642 AAGAAGGCGATCTCGGCCCCGTCTACGGATTCCAGTGGCGCCACTTTGGAGCAGAATACA 662701 Query 70122 TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACA 70181 |||||||| || || ||| | || || || || || ||| | ||| |||||||| | Sbjct 662702 AGGACTGCGATACGGATTATACAGGACAAGGCGTCGACCAACTCCAGCAGATCATTGATA 662761 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 | | | | ||| || || || | | ||| | | | | ||||||| || || ||| Sbjct 662762 CCATTAGAAACAACCCTACTGACCGTCGCATCATTCTATCCGCATGGAACCCAGCCGATA 662821 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTG--TTTGGCTCAGTTTTA-----------C 70288 | | | ||||| || ||||| ||||| || ||| | ||| ||||| | Sbjct 662822 TCCCCATCATGGCTCTGCCACCTTGTCA-TGCCTTTTG-TCAATTTTATGTCTCAACCCC 662879 Query 70289 TCGTACGATGGCAAAT---------TGTCATGCTTAATGTATCAGAGGA-GTGCCGACAT 70338 ||| ||| || | |||| ||| | | || ||| | |||| ||||| Sbjct 662880 TCG--CGAGGGTGAGCGTGCGCGCCTGTCTTGCGTTTTATACCAGCGCTCGTGC-GACAT 662936 Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 |||||||||||| ||||| ||||||||| ||| | || |||| |||||| ||||| Sbjct 662937 GGGCCTCGGTGTGCCCTTCAACATTGCATCGTATGCGCTGCTGACATGCATGATCGCTCA 662996 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 | || | ||| | || |||||| || || ||||| |||||| | ||| | ||| | Sbjct 662997 TGTCACTGACCTCGAGCCGGGCGAGTTTGTCCATACCATGGGCGACACCCACATCTATGT 663056 Query 70459 AAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCA 70514 |||| ||||| | | ||| || || |||| || ||| |||| ||||||| Sbjct 663057 CGATCATATCGATGCGCTCAAGCAACAGCTGCAACGCGAACCGCGACCCTTTCCCA 663112 >seq49 Length=1681262 Score = 120 bits (132), Expect = 5e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135 || || ||||| |||||| | | || | ||| |||||| || ||||| ||||||| | Sbjct 828254 ATTGACATGGCCGCCGACCGTGCTGCTTTCATCGACCAGTCCCAGTCGTTGAATCTGTTC 828195 Query 98136 GTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGC 98195 ||||||||||| | ||| | || |||| ||||| ||||||||| | ||||| ||||| Sbjct 828194 GTTGCCGAGCCAAACTATGGCCGACTGACGTCGATGCACTTTTACTCTTGGAAGAAGGGT 828135 Query 98196 CTCAAGACGGGCATGTACTATCTGAGAAC 98224 ||||||||||||||||| || || |||| Sbjct 828134 CTCAAGACGGGCATGTATTACCTTCGAAC 828106 >seq47 Length=1968370 Score = 120 bits (132), Expect = 5e-22 Identities = 339/514 (66%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 ||| | ||||| |||||| | | |||||| | | | || || || || || ||| Sbjct 706548 GGCATCGTGCCTATGCTCCGCGTTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGC 706489 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 || || || || || ||| | ||| ||||| | || || |||||| |||| || || Sbjct 706488 AACAAGCGCCCGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACCCGGATGTGTTCTCG 706429 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 || | || | ||||| ||| | ||| || ||| || || | ||| |||| ||| Sbjct 706428 TTCCTGGACCTCCGCAAGAACACCGGCAAGGAGGAGAATCGCGCGCGTGACCTGTTCTAT 706369 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTA 97064 || | ||| | || ||| | ||||||||||| ||| | || ||| | |||||| | Sbjct 706368 GCCTTATGGATCCCTGATCTTTTCATGAAGCGTGTCGAAGAGAATGGTGAATGGAGCTTG 706309 Query 97065 ATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG 97124 | ||||| | |||| ||||| ||| |||||||| ||||||||| | Sbjct 706308 TTCTGCCCAAGCGAAGCACCAGGTCTTCACGAGGTGTGGGGCGAGAAGTTTGAGGAGCTG 706249 Query 97125 TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA---GTCGATGCACGAGAA-CT 97180 ||| ||||| | || || || || | | | | ||| | |||| |||| || Sbjct 706248 TACCATCAATACGAACGTGAAGGTCG---CGCGCGCCAAGTTGTCAAGGCAC-AGAAGCT 706193 Query 97181 GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGA 97240 ||| | |||||| || ||| || ||||| || || | ||| || |||||||| Sbjct 706192 CTGGTATGCCATCTTGGAGGCACAAACCGAGACAGGTGGCCCCTTCATGCTGTACAAGGA 706133 Query 97241 TACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGT 97299 |||| || ||||| ||||| | |||||||||| |||||| || |||||| | Sbjct 706132 -CGCGTGTAACCGCAAATCAAACCAGCAGAACTTGGGCACGATCAAGTGCAGCAATCTCT 706074 Query 97300 GCACGGAAATTGTAGAGTACGCCTCTCCGGACGA 97333 | || || || || |||||| || ||||||||| Sbjct 706073 GTACAGAGATCGTCGAGTACTCCAGTCCGGACGA 706040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058746101240