Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq47 136 9e-27 seq23 107 4e-18 seq45 95.1 3e-14 >seq47 Length=1968370 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| |||||||| || || || || || || | |||||| Sbjct 81080 AAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTC 81139 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || |||||||| || ||||| || || | ||| || ||||| || || ||||| || || Sbjct 81140 CTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 81199 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | ||| || | || || || || || ||||| Sbjct 81200 CTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGT 81259 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || |||||||| || || || |||||||| Sbjct 81260 CTTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || | ||| | ||||| || || || || || Sbjct 80640 GTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCGAGCTGCTTGCCC 80699 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| ||||| || || |||||||||||||| ||||| ||||| Sbjct 80700 GCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGGATCTTGGCTTTC 80759 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | ||| ||||||| ||| |||||||| || || | || Sbjct 80760 ACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTCTTGCCTGTCAAGGTC 80819 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 80820 TTGACAAAAATTTGCAT 80836 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || ||||| || ||||| | |||||| || || || || || Sbjct 80868 GTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCC 80927 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 80928 GCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTG 80987 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | ||| || || | ||||||||||| || || || || Sbjct 80988 ACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTCAGAGTC 81047 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 81048 TTCACAAAGATCTGCAT 81064 >seq23 Length=2864373 Score = 107 bits (118), Expect = 4e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || ||||| || || || | |||||| Sbjct 1572467 AGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCC 1572408 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| || || ||||| || || || || ||| Sbjct 1572407 TCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 1572348 Query 104468 TGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||| || || || || | || || | || ||||| || || ||||| Sbjct 1572347 TGAATCTTCTGC-TTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGT 1572289 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| |||||||| Sbjct 1572288 CTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 >seq45 Length=2374188 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194 || ||||||||||| ||||| || ||||| ||||| || || || |||||| | |||||| Sbjct 1436182 TTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCCATCTTT 1436241 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||| | ||||| | || || ||||| || | |||||| ||||| | || | Sbjct 1436242 TGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGT 1436301 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTGT 269284 ||||||||| | ||| |||||| |||||| Sbjct 1436302 GACGAAGGTCTCCACACCGACTTTGCTTGT 1436331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397677137692