Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 1e-11 >seq1 Length=4845341 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 25383 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCC 25442 || ||||||||||||| || || | | ||||| ||| |||| || | ||||| Sbjct 663116 AGAGTGGGAAAGGGTCGCGGTTCGCGTTGCAGCTGTTGCTTGAGCGCATCGATATGATCG 663057 Query 25443 AGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACG 25502 | |||| ||| | ||| |||| || ||||||||||| ||||| || || | || || Sbjct 663056 ACATAGATGTGGGTGTCGCCCATGGTATGGACAAACTCGCCCGGCTCGAGGTCAGTGACA 662997 Query 25503 TAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCC 25562 | ||| |||||| | || || || || || ||||| ||||| || |||| ||| Sbjct 662996 TGAGCGATCATGCATGTCAGCAGCGCATACGATGCAATGTTGAAGGGCACACCGAGGCCC 662937 Query 25563 ATGTCCCCCCGACCTCTGGTA 25583 |||| | | ||| | |||||| Sbjct 662936 ATGT-CGCACGAGCGCTGGTA 662917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137396874077