Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq47 131 2e-25 seq3 84.2 2e-11 >seq47 Length=1968370 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || |||| |||||| |||| || ||||||||||| | Sbjct 80825 AAAAATTTGCATGCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAAT 80884 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | |||| ||||| ||||| || || ||||||| | | || Sbjct 80885 GTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTG 80944 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||||||||| ||||| ||||| | ||| || |||||||| | ||| ||||| Sbjct 80945 CTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTC 81004 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || || || || ||||| ||||||||||||||||| Sbjct 81005 AGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTC 94868 || |||||||| || | ||| ||||| | || || || ||||| || ||||| | Sbjct 81096 GTCGATTCCTTCTGAATGTTGTAATCCG--AGAGGGTGCGACCGTCCTCGAGTTGTTTGC 81153 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||| | | ||||| || || || || ||||| ||||| | ||| || | || Sbjct 81154 CGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACT 81213 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | | | ||||||| | ||||| |||| || || || ||||| ||||| | Sbjct 81214 TGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTTCCGGTAAGTG 81273 Query 94989 TTTTCACAAAGATCTGCATG 95008 | || || |||||||||||| Sbjct 81274 TCTTGACGAAGATCTGCATG 81293 >seq3 Length=1474401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 68082 CCGTGGGATATCTTACAC-CACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCGCGA 68140 |||||||| ||| | || ||| | |||||||| |||| | ||| || || ||||| Sbjct 1050109 CCGTGGGAGATCATGCAGTCAC-GCTCCATCTCACCGAAACGGAGACCACCATCACGCGA 1050051 Query 68141 TCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACCCGACACGCGGCTGTGAAT 68200 || ||| | ||||| ||||| || ||| | |||||||| | | ||||||||||| Sbjct 1050050 ACGACCCTCGACGGGTTGTCGGGTCAGGATTTGGACCGGACCACGCGCACGGCTGTGAAT 1049991 Query 68201 TTTGCCGGACACCATGTGTCTCAGTCTCTGGTACGGGCACGGGGCC-ATAAAGATTTTCG 68259 ||| || |||||| || |||| | |||||| | |||||| | |||||| | | Sbjct 1049990 CTTGTCGTCCACCATATGCTTCAGACGCTGGTA-ATACGTGGGGCCGACAAAGATCTGTG 1049932 Query 68260 CGGGGAACCTGCGCCCCGTTATGCCAGAGTACATGAC 68296 | | | |||| ||||| | |||| ||||||||| Sbjct 1049931 CATTAAGCTTGCGACCCGTAAAGCCATTGTACATGAC 1049895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290925421640