Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 168 1e-37 seq23 163 4e-36 seq3 141 1e-29 >seq12 Length=4600585 Score = 168 bits (186), Expect = 1e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||||||||| |||||||| ||||| || || |||||||| ||||||||| ||||||| Sbjct 3667810 ATCACCAAGCCTGCTATCCGCCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTCTGGC 3667869 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 || ||||||| |||| |||| ||| ||||| | ||||| ||| ||| || | |||| Sbjct 3667870 CTGATCTATGAGGAGACCCGTGGTGTCCTGAAGGTGTTCCTTGAGAACGTCATTCGTGAT 3667929 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 ||| || ||| || |||||||| || || ||||| ||||| ||| | || ||||||| Sbjct 3667930 GCTGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACTTCCCTCGACGTCGTCTAC 3667989 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | || || || ||||||| | || ||||| || ||||| || || Sbjct 3667990 GCTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAAGCTGCT 3668040 >seq23 Length=2864373 Score = 163 bits (180), Expect = 4e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 || |||||||| |||||||||||||| || || |||||||| ||||||||| ||||||| Sbjct 1189726 ATTACCAAGCCTGCTATCCGTCGTCTTGCACGCCGTGGTGGTGTCAAGCGTATCTCTGGC 1189667 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | |||| || |||| |||| |||| ||||| ||||||| ||| ||| |||| ||| Sbjct 1189666 CTTATCTACGAGGAGACCCGTGGTGTTCTGAAGGTCTTCCTTGAGAACGTCATCCGTGAC 1189607 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 ||| | ||| || |||||||| || || ||||||||||| ||| | || | ||||| Sbjct 1189606 GCTGTTACCTACACTGAGCACGCCAAGCGCAAGACTGTCACATCCCTCGACGTTGTCTAC 1189547 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | || || || ||||||| | || ||||| || ||||| | |||| Sbjct 1189546 GCTCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGCGGTTAAACACCTAA 1189494 >seq3 Length=1474401 Score = 141 bits (156), Expect = 1e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 || |||||||| ||||| |||||||| |||||||||||||| ||||||||| | ||||| Sbjct 554742 ATTACCAAGCCTGCTATTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGGT 554801 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 || | || || |||| || | ||| ||||| ||||| | | | ||| |||| ||| Sbjct 554802 CTGATTTACGAGGAGACCCGCGGTGTCCTGAAGGTCTTCTTGGAAAACGTCATCCGCGAT 554861 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 ||| | ||| || |||||||| || | ||||| ||||| ||| | ||| ||||||| Sbjct 554862 GCTGTTACCTACACTGAGCACGCCAAGAGAAAGACCGTCACGTCCCTTGATGTCGTCTAC 554921 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | || || || ||||| | |||| ||||| || Sbjct 554922 GCTCTTAAGCGCCAGGGCCGCACCCTTTACGGTTTCGG 554959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075155198957