Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq47 223 4e-53 seq45 100 4e-16 >seq47 Length=1968370 Score = 223 bits (246), Expect = 4e-53 Identities = 945/1477 (64%), Gaps = 37/1477 (3%) Strand=Plus/Plus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTA-TCAAATGGAT 62694 || ||||| || ||||||| | || || | |||| || | ||| | |||||||| | Sbjct 705752 TAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT--CGGGCGAGTCAAATGGGT 705809 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | ||||| || || || | || | ||||| | |||||| || | ||| | Sbjct 705810 AGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGAC 705869 Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814 | | || ||| |||||||| || | |||||| || || || || ||||| || || | Sbjct 705870 GCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTA 705929 Query 62815 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGC 62867 || | | |||| | ||||| ||||| | || || | |||||||| |||| Sbjct 705930 AGTTGCGCGTCACAA---CCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGC 705986 Query 62868 CCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62927 ||| | ||||| || ||| || | | |||| ||| || || ||||| || | Sbjct 705987 GATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCC 706045 Query 62928 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 62987 | | | || | | ||||| || || ||||| || |||||||| || || || || Sbjct 706046 GGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTC 706105 Query 62988 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047 || || || || ||||||||| ||||| || || ||||| || ||| || || Sbjct 706106 TGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCG 706165 Query 63048 ATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT 63106 | || | || | || || | ||||| | || | ||||| | | ||| | Sbjct 706166 GTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGACAAC----TTGGCGCG 706220 Query 63107 C----CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 | | ||| | ||||||| | |||| || |||| || ||||| || | || Sbjct 706221 CGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGT 706280 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 | || || ||| || || | ||| ||| || || | || | || || | Sbjct 706281 GAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCT 706340 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63281 |||| || |||||||| ||||| | || ||| || || || | | | || ||||| Sbjct 706341 TCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCGCGCGATTCTCCTCC 706399 Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || || || ||||| || || ||||||| | | ||| | ||||| || || | | Sbjct 706400 TTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGG 706459 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || ||||| | | | || || || ||||| || || ||||| | || | ||| |||||| Sbjct 706460 TAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTA 706519 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || ||||| | | ||| || | || ||||| || |||||||||||| | ||| || Sbjct 706520 TTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTAC 706579 Query 63462 CTTCCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGA 63517 || || || || || | ||| ||||| || || || || | || || Sbjct 706580 GAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGA 706635 Query 63518 GATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTT 63577 ||| | ||| ||| | || |||||||| || || || ||| || ||||| | Sbjct 706636 AATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGT 706695 Query 63578 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63637 | | ||| ||| |||| || ||||| || || || || || | ||| ||| Sbjct 706696 CAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACT 706755 Query 63638 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697 ||||| ||||| |||| ||||| | || ||||| |||||||| || || ||||| Sbjct 706756 CGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATC 706815 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757 | ||||| || || || |||||||| ||||||||||| |||| || | ||||| Sbjct 706816 CTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTT 706875 Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817 | ||| | |||| ||| || | ||||| || || || ||||| |||||||| Sbjct 706876 GCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCC 706935 Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC 63877 || || || ||||| || || | ||||| || || || || ||| ||| | Sbjct 706936 GAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTCATAATGATAGC 706995 Query 63878 CATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63937 ||| | || | || |||| || || |||| ||||| | |||| Sbjct 706996 GTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTGATATAGCCATG 707055 Query 63938 TAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCCTTGTGTAGATTTGATACGG 63996 || || || ||||| | | | | || || || ||||| ||||| || || || |||| Sbjct 707056 CAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAGGTTGGACACGG 707114 Query 63997 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 64056 | || | || || || |||||||| || ||||| | || || | || ||| | | Sbjct 707115 CGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATATGCAGCTGTCT 707174 Query 64057 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 ||||||| || |||||| ||| || || || || || Sbjct 707175 CGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 100 bits (110), Expect = 4e-16 Identities = 221/328 (67%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||||| ||| |||| | || ||| | || || | |||||| |||||||||||| Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||| | || | |||||||| ||||| ||||| || |||||||| || | || Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT-- 33709 || | ||||| ||||| | || || ||||| |||| || || || || || || | Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808 Query 33710 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTT 33765 ||||| ||||| || || | ||||| ||||| || || || |||| || Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751 Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 || | |||||| || ||| || || | ||| | |||||| | ||||| || || Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGA 33853 || | ||||| || ||||| | ||||| Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||| ||||| | || || |||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||| || |||||||| ||||| || || || ||||| ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-A 33481 ||| || || || |||||||| |||| | | ||| || | | || | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCGTT-TGAGGAGA 1436153 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946818444840