Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq47 279 1e-69 seq1 125 2e-23 >seq47 Length=1968370 Score = 279 bits (308), Expect = 1e-69 Identities = 1127/1751 (64%), Gaps = 47/1751 (3%) Strand=Plus/Minus Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 |||| || | |||| || || |||||||| ||||| |||||||| ||| | ||||| | Sbjct 706883 TCAACGGCAAGATTGCCGAGCGACCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTC 706824 Query 363491 ATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA---- 363546 | || |||| | || | ||| ||||| || || || || | || || | | | Sbjct 706823 ACGGCGAGGATATCGAAGGCGCCATTGAGACTTACAACCTCAT--GT-CT-GAGAAATAC 706768 Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || ||||| | || || ||| ||| || || || | | ||| ||| |||| || Sbjct 706767 TTTACCCACGCGAGTCCCACCCTGTTCAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCC 706708 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | | | |||||||| ||||| || || || |||| ||| || || || | | Sbjct 706707 TGCTTTTTGTTGACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTGAAAATT 706648 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || | | |||||||||| || || || || ||| | |||||| | | || || Sbjct 706647 TGCTCCCAAATTTCCAAGACCGCGGGTGGCATCGGTCTCAACATCCACCAGATCCGGGCT 706588 Query 363727 CAGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | ||||| ||| || || || || || || || | || || ||||| || Sbjct 706587 TCCGGCTCGTACAT-CGCTGGTACCAATGGTTATTCCAACGGCATCGTGCCTATGCTCCG 706529 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || | | || || || | || ||||| || ||||| |||||| || || || Sbjct 706528 CGTTTACAATAACACGGCTCGCTATGTCGATCAAGGTGGCAACAAGCGCCCGGGTGCTTT 706469 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || |||||||| || | ||| | || ||| || || ||||| || || Sbjct 706468 CGCCATCTACCTCGAGCCCTGGCACCCGGATGTGTTCTCGTTCCTGGACCTCCGCAAGAA 706409 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || || ||||| || || ||||| ||||||||||| | ||| | |||| | Sbjct 706408 CACCGGCAAGGAGGAGAATCGCGCGCGTGACCTGTTCTATGCCTTATGGATCCCTGATCT 706349 Query 363966 TTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 ||| |||||||| || || | ||| |||| | | | || |||||| |||| Sbjct 706348 TTTCATGAAGCGTGTCGAAGAGAATGGT--GAATGGAGCT-TGTTCTGCCCAAGCGAAGC 706292 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 ||||||||| ||| || ||||| || | | || | || ||| | | || ||| Sbjct 706291 ACCAGGTCTTCACGAGGTGTGGGGCGAGAAGTTTGAGGAGCTGTACCATCAATACGAAC- 706233 Query 364083 GGAGGGAAAGGCTCGTAAGACAA-TTCCC---GCACAGAAGCTATGGTTTGCCATCATGG 364138 | ||| | | || | ||| || | ||||||||||| |||| ||||||| ||| Sbjct 706232 ---GTGAAGGTCGCGCGCGCCAAGTTGTCAAGGCACAGAAGCTCTGGTATGCCATCTTGG 706176 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | | || | |||||||| |||| ||| ||||||| || |||| |||||||| | Sbjct 706175 AGGCACAAACCGAGACAGGTGGCCCCTTCATGCTGTACAAGGACGCGTGTAACCGCAAAT 706116 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 | ||||||||| || | || || || || ||||| || ||||| ||||| | || | Sbjct 706115 CAAACCAGCAGAACTTGGGCACGATCAAGTGCAGCAATCTCTGTACAGAGATCGTCGAGT 706056 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGC--GTCGATCGCGCTTCCGGCGTT 364316 || || ||| ||||| || ||||| || | || ||| | || | || | || Sbjct 706055 ACTCCAGTCCGGACGAAGTAGCTGTATGCAATTTGGCCAGTC--TGGCTTTGCCCACCTT 705998 Query 364317 TGTAAAAGAT--GGTACT-TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 ||| || || | | | ||||| ||| | | | || || | | || || Sbjct 705997 TGTCAAGAATCGCGAAGTGTTTGATTTCCAAAAGTTGCACGATGTTGTCAAGGTTGTGAC 705938 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433 |||| | ||||| ||||||||| || || ||||| | |||||||| ||||| || Sbjct 705937 GCGCAACTTAAACAAGATTATCGACATCAACTACTATCCTGTGCCTGAAGCTGAGCGCTC 705878 Query 364434 TAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA---T 364490 || ||||||||||| || || ||||| ||||| | || || || || | |||| | Sbjct 705877 AAACATGCGTCATCGTCCCATCGGTCTAGGTGTCAACGGTCTTGCCGATGCCTTTATGTT 705818 Query 364491 GATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 ||||| | | ||||||| ||||| || || || || | |||||||||| Sbjct 705817 GATGCGCTA---CCCATTTGACTCGCCCGAGGCCAAGAAACTCAACAGTCAGATCTTTGA 705761 Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTA 364610 || || || |||||| || ||||| || | || || || || Sbjct 705760 GACCATCTACCATGCCGCTCTGGAGGCTTCCAACGAGCTCGCGGTCCTGAACGGTCCCTA 705701 Query 364611 CTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT 364670 | | ||||| || || ||| || |||| || |||| ||| | ||||| || Sbjct 705700 CGCGACTTACGAAGGTAGCCCAGCGTCCAAGGGCGTCTTGCAGTATGACTTCTGGAACGT 705641 Query 364671 CACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTAC 364730 || || | | | |||| |||||| | | || |||| || | || ||| Sbjct 705640 GACACCCACCGATCTATGGGACTGGGCTGCCCTCAAGGCCAAGATTGCGCAGACTGGCTT 705581 Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 || ||||| || | || |||||||| || || || ||| | ||||| || || Sbjct 705580 GCGTAACTCGCTGCTGGTGGCACCCATGCCGACTGCCTCAACTTCGCAGATTCTGGGCTT 705521 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 ||| || ||||||||||| ||||| | ||| || || | || || ||| | |||| Sbjct 705520 CAATGAATGCTTCGAACC--TTACACGTCCAACCTGTACACCCGTCGCGTTTTGGCCGGT 705463 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 ||||| | | ||||| || | |||||||||| ||| || |||||| Sbjct 705462 GAATTCCAAATCGTTAACCCGTGGTTGCTCAAGGATCTGGTTGACATGGGCCTGTGGAAC 705403 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 ||| | |||||| ||||| ||| ||||| || | ||| ||| || | Sbjct 705402 GACGATGTCAAGAACATGATCATGTCCGACAATGGCTCCATCCAGCGCATCCCTAATATC 705343 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || ||| | || || | | ||||| |||||||||||| | || || | ||||| Sbjct 705342 CCCGAAAAGCTCAAAGCCCTCTACAAGACCGTATGGGAACTCTCGCAACGTCATATCATT 705283 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCC--AGTCGTTTAACGTATTCA 365086 || ||||| || || ||||| || ||||| ||||||| |||| | ||| | || | Sbjct 705282 GACATGGCAGCTGACCGCGGCGCCTTTATTGACCAGAGCCAAAGTC--TAAACATCTTTA 705225 Query 365087 -TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGT 365145 || | | |||| || | ||| || || ||||| || || || ||||| ||| Sbjct 705224 TTGGCGAACCCAA-CTTTGGCAAACTGACGAGTATGCACTTTTATGGCTGGAAGAAGGGT 705166 Query 365146 CTTAAGACAGG 365156 || |||||||| Sbjct 705165 CTCAAGACAGG 705155 >seq1 Length=4845341 Score = 125 bits (138), Expect = 2e-23 Identities = 300/449 (67%), Gaps = 30/449 (7%) Strand=Plus/Plus Query 111423 AAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAAC 111482 || ||||||||||| || || |||||||| ||||| || || ||| || | || | Sbjct 662581 AAGATTTGGGATGGCAACGGTTCACGTGAGTTTCTCGACTCTCGTGGACTGTCCCACCGC 662640 Query 111483 GAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC 111542 ||||||| |||||||| || || |||||||| || |||||||||||||| ||||| ||| Sbjct 662641 AAAGAAGGCGATCTCGGCCCCGTCTACGGATTCCAGTGGCGCCACTTTGGAGCAGAATAC 662700 Query 111543 AAAACCATGCACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAATGTCATT 111599 || | || ||| | || || | ||| || || ||| | ||| | ||||| Sbjct 662701 AAGGAC-TG--CGATACGGATTATACAGGACAAGGCGTCGACCAACTCCAGCAGATCATT 662757 Query 111600 GATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 ||| |||| |||||||| ||| |||||||| ||| | |||||||||||| Sbjct 662758 GATACCATTAGAAACAACCCTACTGACCGTCGCATCATTCTATCCGCATGGAACCCAGCC 662817 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCAT--CTTATGTGCCAGTTTTATGT----A 111713 | | | ||||| || ||||| |||||| ||| ||| || |||||||| | Sbjct 662818 GATATCCCCATCATGGCTCTGCCACCTTGTCATGCCTTTTGT--CAATTTTATGTCTCAA 662875 Query 111714 CACGACGGGATG--------------CTTTCATGCCAAATGTATCAGCGATC-TGCTGAT 111758 | | || || | || || ||| | || ||||| || ||| || Sbjct 662876 CCCCTCGCGAGGGTGAGCGTGCGCGCCTGTCTTGCGTTTTATACCAGCGCTCGTGC-GAC 662934 Query 111759 ATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCT 111818 || || || ||||| || || || |||||| || || || || || ||| | |||||| Sbjct 662935 ATGGGCCTCGGTGTGCCCTTCAACATTGCATCGTATGCGCTGCTGACATGCATGATCGCT 662994 Query 111819 CATTTTACAAATCTCAAACCGGGTGAATT 111847 ||| | || | ||| | ||||| || || Sbjct 662995 CATGTCACTGACCTCGAGCCGGGCGAGTT 663023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352781738318