Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq23 102 7e-17 seq47 82.4 7e-11 >seq23 Length=2864373 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || ||| |||| || ||| | | Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | ||||| || ||||| ||||| || ||||| ||||| || || Sbjct 1571632 GACTCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 1571691 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | |||||||| ||||| |||| | | | || ||||| ||| Sbjct 1571692 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAAC 1571751 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||||| || |||| || || Sbjct 1571752 ATTCAAAAGGAATCCACCCTTCACTTGGT 1571780 >seq47 Length=1968370 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | ||||| | ||||| || | Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 81004 GACACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 80945 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||||| ||||| || | | | || || || ||| Sbjct 80944 CAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTACAAC 80885 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || | ||||| ||| Sbjct 80884 ATTCAAAAGGAATCGACGCTGCATTTGGTG 80855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935743247595