Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq45 161 9e-35 seq23 136 4e-27 seq47 134 1e-26 seq48 105 6e-18 seq46 86.0 6e-12 >seq45 Length=2374188 Score = 161 bits (178), Expect = 9e-35 Identities = 346/499 (69%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||| ||||| | ||||||||| | | || | | ||| || |||||| Sbjct 1436125 AAGAAGGCCGAATGGGCATTCAAGTGGATCTCCTCAA--ACGGTGTGTTT-GCTGAGCGT 1436181 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 |||| || ||||| ||||||||| |||| || |||||| |||||| |||||||| Sbjct 1436182 TTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCCATCTTT 1436241 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | | ||||| || ||||| || ||||||||||| || ||||| Sbjct 1436242 TGGCTCAAGAAGCGTGGTC-TGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCG 1436300 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAA 46337 ||||| || || || || |||||||| |||||| || | ||||| | | | ||| Sbjct 1436301 TGACGAAGGTCTCCACACCGACTTTGCTTGTCTC--CTTT---TCTCGCAT-CTCCGCAA 1436354 Query 46338 GCTTGCGCCCGAC--ACCGTG--CTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGG 46393 || || || | | |||| || | || || ||||| || | || || |||| Sbjct 1436355 GC-AGCCTCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGAGATCGAAAAGG 1436413 Query 46394 AGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAGTCAATGTGC 46452 |||| | || |||| |||||| || ||| | ||||||||||| || || |||||| Sbjct 1436414 AGTTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGACTCTC-ATGTGC 1436472 Query 46453 GACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTT 46512 | ||||| |||||||| || ||||| || ||||| || || || ||| || || Sbjct 1436473 CAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGC-TCGGCA-TCGA--CAAGTT 1436528 Query 46513 C----ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAA 46568 | | || ||| || || || |||||| ||| ||||| || ||||||| || || Sbjct 1436529 CTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGACCAA 1436588 Query 46569 TTTTTTCGAAAAGCGCGTC 46587 || || || ||||| ||| Sbjct 1436589 CTTCTTTGAGAAGCGTGTC 1436607 >seq23 Length=2864373 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | || |||||||| || |||||||||||| Sbjct 1571570 CCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 1571511 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||||||| || |||| | |||||||| |||||||| Sbjct 1571510 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGA 1571451 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||||| | ||| | || |||| ||||||| Sbjct 1571450 ATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACT 1571391 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || ||||| || || || ||||||||||||||| Sbjct 1571390 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1571343 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | ||| |||||||| || || ||||| ||| Sbjct 1572254 CCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAA 1572195 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | |||||||||||||||||| Sbjct 1572194 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGA 1572135 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||| | | || | | || | ||||| | Sbjct 1572134 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACC 1572075 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| || || || |||||||||||||| Sbjct 1572074 TCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || || || | ||| || |||||||||||||||||||| Sbjct 1571798 CCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 1571739 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | |||||||||||||||||| Sbjct 1571738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1571679 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||||| | ||| | | |||| ||||| | Sbjct 1571678 ATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACC 1571619 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || | || || || || || ||||| Sbjct 1571618 TCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || ||||| | || |||||||| || |||||||| || Sbjct 1572026 CCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 1571967 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| ||| | || | |||||||||||||||||| Sbjct 1571966 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1571907 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||| | | || | || || | ||||| | Sbjct 1571906 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACT 1571847 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| | || || |||||||||||||| Sbjct 1571846 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||||||||||||||| |||||||| || Sbjct 1572482 CCGCCACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAA 1572423 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | |||||||||||||||||| Sbjct 1572422 AGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1572363 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||||| | ||| | | || | ||||| | Sbjct 1572362 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACC 1572303 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || | || || || || |||||||| Sbjct 1572302 TCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 >seq47 Length=1968370 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | |||||| ||||| |||||||||||||| Sbjct 81066 CCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAG 81125 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || || ||||| || |||| | |||||||||||| || ||| Sbjct 81126 AGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 81185 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | || || | |||||||| Sbjct 81186 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACT 81245 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || ||||| || || || ||||| |||||||||| Sbjct 81246 TCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCATGA 81294 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| || |||||||| ||||| | ||||| ||||||||||||||||| || Sbjct 80837 GCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGA 80896 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| || |||| | ||||||||| || ||||| Sbjct 80897 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGG 80956 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||||| | || | || || | || || | Sbjct 80957 AATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAAC 81016 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| ||||| || || || |||||||| Sbjct 81017 TTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || ||||| | || |||||||||||||| ||||| || | Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| || |||| | |||||| ||||| || || Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 131128 ATTCCTTCTTTGTC 131141 || |||||||| || Sbjct 80730 ATGCCTTCTTTATC 80743 >seq48 Length=1814144 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | |||||||||||| ||||||||||| || Sbjct 1641605 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAA 1641546 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | ||||||||||||||| || Sbjct 1641545 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGA 1641486 Query 131128 ATTCCTTCTTT 131138 || ||||| || Sbjct 1641485 ATGCCTTCATT 1641475 >seq46 Length=2048726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||||||||||| || |||||||| ||| Sbjct 962338 CCACCACGGAGACGGAGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 962397 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| | || | ||||||||| ||||| || Sbjct 962398 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGA 962457 Query 131128 ATTCCTT 131134 || |||| Sbjct 962458 ATACCTT 962464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012510892160