Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq43 131 1e-25 seq34 131 1e-25 seq33 131 1e-25 seq8 131 1e-25 seq47 127 1e-24 seq12 105 4e-18 seq23 96.9 2e-15 seq13 95.1 8e-15 seq1 86.0 4e-12 >seq43 Length=2303 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| Sbjct 1043 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGTAGATAGGGACAGTGGGAATCTCGT 1102 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1103 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1137 >seq34 Length=2752318 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| Sbjct 17248 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGTAGATAGGGACAGTGGGAATCTCGT 17307 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 17308 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 17342 >seq33 Length=10039 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| Sbjct 8250 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGTAGATAGGGACAGTGGGAATCTCGT 8191 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8190 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8156 Score = 105 bits (116), Expect = 4e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 6279 CTCTCTCTTCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 6220 Query 20007 GGTAATATTTAGC 20019 | | |||||||| Sbjct 6219 GCCATTATTTAGC 6207 >seq8 Length=107663 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| Sbjct 104303 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGTAGATAGGGACAGTGGGAATCTCGT 104362 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 104363 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 104397 Score = 105 bits (116), Expect = 4e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 106274 CTCTCTCTTCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 106333 Query 20007 GGTAATATTTAGC 20019 | | |||||||| Sbjct 106334 GCCATTATTTAGC 106346 >seq47 Length=1968370 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||||| |||||||| || ||| |||||||||||||||||| || ||| Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || | || || || ||||| || || || ||||| || | || Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || |||||||| | || ||||| ||| || Sbjct 80730 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACC 80789 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| || || |||||||| || || || || |||||| Sbjct 80790 TCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCATG 80837 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38100 AAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT 38159 || |||| ||||||||| || || ||||||||||| ||||| || || | | || Sbjct 80847 AAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGA 80906 Query 38160 TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCT 38219 |||| || | || || || ||||| || || || || ||||| | || | |||||| Sbjct 80907 CCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCC 80966 Query 38220 TTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTA 38279 ||||| ||| || ||| ||||| | || || || ||||||||| || ||| Sbjct 80967 TTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTA 81026 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || |||| || ||||| || |||||||| Sbjct 81027 ATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 >seq12 Length=4600585 Score = 105 bits (116), Expect = 4e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 36524 CTCTCTCTTCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 36465 Query 20007 GGTAATATTTAGC 20019 | | |||||||| Sbjct 36464 GCCATTATTTAGC 36452 >seq23 Length=2864373 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||| | ||| |||||| |||||| || || |||||||| | Sbjct 1571572 TACCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1571513 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || || || || || ||||| || ||||| || ||||| | | Sbjct 1571512 AGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAG 1571453 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || ||||| ||| || ||||| || |||| || || || | || | Sbjct 1571452 GAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGA 1571393 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| | || || || || || || | ||| || ||||| |||||||||||| Sbjct 1571392 CTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTTT 1571340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||||| ||||| ||| ||||||||||| |||||||||| Sbjct 1571800 TACCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAG 1571741 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || ||||| || || || | | Sbjct 1571740 AGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAG 1571681 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTC 38266 ||| ||| || ||||| || || ||||| || |||| | ||| | || || Sbjct 1571680 GGATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGAC--TC 1571623 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || ||||| || || |||||||| || || || || ||||| Sbjct 1571622 AACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 >seq13 Length=37301 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTT-CAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 3840 CTCTCTCTTCAGAGTTCTTTTTCATCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCT 3781 Query 20006 CGGTAATATTTAGC 20019 || | |||||||| Sbjct 3780 CGCCATTATTTAGC 3767 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTT-CAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 13521 CTCTCTCTTCAGAGTTCTTTTTCATCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCT 13580 Query 20006 CGGTAATATTTAGC 20019 || | |||||||| Sbjct 13581 CGCCATTATTTAGC 13594 >seq1 Length=4845341 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAAT 25960 |||||||| |||||| ||||||||| ||| || |||||| | || ||| ||||| Sbjct 2541284 CCGTTCCCCTGGCTGCGGTTTCGCTGGATGGTGACTAGGGGCAGTGGGAAGCTCTTTAAT 2541343 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACG 25990 || |||||||||||| |||||||||||||| Sbjct 2541344 CCATTCATGCGCGTCGCTAATTAGATGACG 2541373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946999973719