Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq47 235 7e-57 seq45 89.7 7e-13 >seq47 Length=1968370 Score = 235 bits (260), Expect = 7e-57 Identities = 948/1477 (64%), Gaps = 37/1477 (3%) Strand=Plus/Plus Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTA-TCAAATGGAT 62549 || ||||| || ||||||| | || || | |||| || | ||| | |||||||| | Sbjct 705752 TAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCT--CGGGCGAGTCAAATGGGT 705809 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | ||||| || || || | || | ||||| | |||||| || | ||| | Sbjct 705810 AGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGAC 705869 Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669 | | || ||| |||||||| || | |||||| || || || || ||||| || || | Sbjct 705870 GCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTA 705929 Query 62670 GATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGC 62722 || | | |||| | ||||| ||||| | || || | |||||||| |||| Sbjct 705930 AGTTGCGCGTCACAA---CCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTTCGC 705986 Query 62723 CCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62782 ||| | ||||| || ||| || | | |||| ||| || || ||||| || | Sbjct 705987 GATTCT-TGACAAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCC 706045 Query 62783 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 | | | || | | ||||| || || ||||| || |||||||| || || || || Sbjct 706046 GGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTC 706105 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 || || || || ||||||||| ||||| || || ||||| || ||| || || Sbjct 706106 TGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCG 706165 Query 62903 ATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT 62961 | || | || | || || | ||||| | || | ||||| | | ||| | Sbjct 706166 GTTTGTGCCTCCAAGATGGCATACCAGA-GCTTCTGTGCCTTGACAAC----TTGGCGCG 706220 Query 62962 CTT----TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017 | ||| | ||||||| | |||| || |||| || ||||| || | || Sbjct 706221 CGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGT 706280 Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 || || || ||| || || | ||| ||| || || | || | || || | Sbjct 706281 GAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCT 706340 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63136 |||| || |||||||| ||||| | || ||| || || || | | | || ||||| Sbjct 706341 TCATGAAAAGATCAGGGATCCATAAGGC-ATAGAACAGGTCACGCGCGCGATTCTCCTCC 706399 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || || ||||| || || ||||||| | | ||| | ||||| || || | | Sbjct 706400 TTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGG 706459 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || ||||| | | | || || || ||||| || || ||||| | || | ||| |||||| Sbjct 706460 TAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTA 706519 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || ||||| | | ||| || | || || ||||| ||||||||| || | ||| || Sbjct 706520 TTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTAC 706579 Query 63317 CTTCCACTGGCACGAATATTACTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGA 63372 || || || || || | ||| ||||| || || || || | || || Sbjct 706580 GAGCCGGAAGCCCGGAT----CTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGA 706635 Query 63373 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 ||| | ||| ||| | || ||||||||||| || || ||| ||| ||||| | Sbjct 706636 AATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGT 706695 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 | | ||| ||| |||| || ||||| || || || || || | ||| ||| Sbjct 706696 CAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACT 706755 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 ||||| ||||| |||| ||||| | || ||||| |||||||| || || ||||| Sbjct 706756 CGCGTGGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATC 706815 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 | ||||| || || || |||||||| ||||||||||| |||| || | ||||| Sbjct 706816 CTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTT 706875 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | ||| | |||| ||| || | ||||| || || || ||||| |||||||| Sbjct 706876 GCCGTTGAGCTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCC 706935 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 63732 || || || ||||| || || | ||||| || || || || ||| | | | Sbjct 706936 GAAATCGCGATCGTAGATGATGGCTGAGTTAAGACGCTCTGCATTCTTCATAATGATAGC 706995 Query 63733 CATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 63792 || | || | || |||| || || |||| ||||||| |||| Sbjct 706996 GTGAGTGGCATCCGACACAAGAGGAGCTTGCTTATTGGTTTTGGGATTGATATAGCCATG 707055 Query 63793 TAAATCCTCCATCACTTCACTAAATAG-tttttttGTTTCTTTGTGTAGATTTGATACGG 63851 || || || ||||| | | | | || || || ||||||||||| || || || |||| Sbjct 707056 CAAGTCATCAATCACGT-GCGAGAAAGCCTTCTTCGTTTCTTTGTGCAGGTTGGACACGG 707114 Query 63852 CTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 63911 | || | ||| || || |||||||| || ||||| | || || | || ||| | | Sbjct 707115 CGATACGAGCAGCAAGGATGGCATAGTCAGGATGGCGCGTTGTCATATATGCAGCTGTCT 707174 Query 63912 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACC 63948 ||||||| || |||||| ||| || || || ||||| Sbjct 707175 CGGCTGCAAGGTTGTCCAGTTCCACGGTAGTCACACC 707211 >seq45 Length=2374188 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| ||| ||||| ||||| | || | |||||| || || || Sbjct 1436331 ACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAG 1436272 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| || |||||||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 1436271 ACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAA 1436212 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-A 32838 || || || || || ||||| |||| | | ||| || | | || | | | | | Sbjct 1436211 GATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCGTT-TGAGGAGA 1436153 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTT 32869 ||||||| ||||| ||||||||||| || Sbjct 1436152 TCCACTTGAATGCCCATTCGGCCTTCTTCTT 1436122 Score = 82.4 bits (90), Expect = 1e-10 Identities = 217/328 (66%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || |||| ||| |||| | || ||| | || || | ||| || || ||||||||| Sbjct 1435987 ATGGCATCAAAAAGATGCTCCTTCTCAGCAGAGTCCTTGATATAAGTGTCGATCAAAAGA 1435928 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||| | || | |||||||| ||||| || || || ||||||||||| | || Sbjct 1435927 GAATAGGTCTCAGCGTGAATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACTTGGCT 1435868 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT-- 33066 || | ||||| ||||| | || || ||||| | || || || || || || || | Sbjct 1435867 TCAGGGATCTGGACTTCATTGCAGAAGCGTTCGACCAAGTTCTCGTTGACGATGCCATCT 1435808 Query 33067 -CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT-GTT 33122 ||||| ||||| || || | ||||| ||||| || || || |||| || Sbjct 1435807 GCACTG---GCAAAGAAAGCAAGCACATGCGAGATAAAGTAACGCTCATCCTTGGTCATT 1435751 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 || | |||||| || ||| || || | ||| | |||||| | ||||| || || Sbjct 1435750 TTGTTCTCCCAATCGTTCTGATCCTTCGAAAGATCGATCTCTTCCGCAGTCCAGAAAGAA 1435691 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGA 33210 || | ||||| || ||||| | ||||| Sbjct 1435690 GCGACAGCCTTCTTGTACATTTGCCAGA 1435663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631611900400