Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq47 131 1e-25 seq23 95.1 1e-14 >seq47 Length=1968370 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || ||| | || || || || ||| Sbjct 80836 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATCATCT 80777 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| |||| || ||| || |||||||| ||||| ||||||||| Sbjct 80776 GATACGATCGATAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAA 80717 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| ||||| || | || || | || ||| || || |||||| Sbjct 80716 CAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTACAAT 80657 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || |||||||| ||||| || || Sbjct 80656 ATTCAAAAGGAGTCCACGCTGCATTTGGTCCT 80625 Score = 127 bits (140), Expect = 2e-24 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| ||||||| || | || || | ||||| || |||||| Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | || || | ||| ||||| ||||| ||||| || || Sbjct 81004 GACACAATCGA--CAATGTCAAGGCCAAGATTCA-AGACAAGGAAGGCATTCCTCCAGAT 80948 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| || | || || | ||||||| | || ||| Sbjct 80947 CAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTAC 80888 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| ||||| ||||| ||||| ||||| Sbjct 80887 AACATTCAAAAGGAATCGACGCTGCATTTGGTGCT 80853 Score = 114 bits (126), Expect = 1e-20 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | || || | ||||| ||||| ||| Sbjct 81292 ATGCAGATCTTCGTCAAGACACTTACCGGAAAGACTATAACCCTTGAAGTCGAGTCCTCT 81233 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| | || | ||| ||||| ||||| || || |||||| Sbjct 81232 GACACCATTGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAAGGCATCCCGCCTGAC 81176 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||||||| | || || | |||||| | |||||| Sbjct 81175 CAGCAGCGTCTGATCTTTGCCGGCAAACAACTCGAGGACGGTCGCACCCTCTCGGATTAC 81116 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || ||| | ||||| Sbjct 81115 AACATTCAGAAGGAATCGACCCTCCATCTCGTGCT 81081 >seq23 Length=2864373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | ||||| |||| || ||||||||| Sbjct 1572256 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCT 1572315 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| | ||||| || || ||||| || || || || || ||||| Sbjct 1572316 GACTCCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1572375 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || || | ||| || | || ||||| Sbjct 1572376 CAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAAC 1572435 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||| | || || Sbjct 1572436 ATCCAAAAGGAGTCGACCCTCCATCTTGTCCT 1572467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327741221935