Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq45 127 2e-24 >seq45 Length=2374188 Score = 127 bits (140), Expect = 2e-24 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||||||||| || || || | ||| |||||||| || | | Sbjct 1436330 CAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGA 1436271 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | ||| || || |||||||||||||| || || ||||| ||||| || || Sbjct 1436270 CCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAG 1436211 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 ||||| ||||| || ||||| || || | ||| || ||||| || || | | Sbjct 1436210 ATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCG---TTTGAGGAG 1436154 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||||| || || ||||| ||||| || ||||| || || || Sbjct 1436153 ATCCACTTGAATGCCCATTCGGCCTTCTTCTTGATGCAGGG 1436113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860458922760