Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 149 5e-31 seq47 134 1e-26 seq45 91.5 1e-13 >seq23 Length=2864373 Score = 149 bits (164), Expect = 5e-31 Identities = 156/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || || || | ||||| || || ||||||||||||| || | Sbjct 1571340 AAACATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTC 1571399 Query 22275 CACCGA---TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 |||| || || | ||| |||| || || ||||||||||||||||| ||||| || Sbjct 1571400 TTCCGACTCTATCGAGAACG---TCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCC 1571456 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||| || || || || ||||| ||||| ||||| || ||| ||||||| ||||||| Sbjct 1571457 GGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGA 1571516 Query 22392 TTACAACATTCAAAAAGAATCCAC 22415 ||||||||| || || || ||||| Sbjct 1571517 TTACAACATCCAGAAGGAGTCCAC 1571540 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| || || || || | || Sbjct 1571572 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCC 1571631 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| || || || |||||||||||||| || || || || || Sbjct 1571632 GACTCGATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 1571691 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| |||||| |||| ||||||||| Sbjct 1571692 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGATTACAAC 1571751 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||||||| | || || ||| | || |||| || ||| Sbjct 1571752 ATTCAAAAGGAATCCACCCTTCACTTGGTTCTCCGCCTGCGTGGTGGT 1571799 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || | || ||||| || || | | Sbjct 1572028 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACCATTACACTTGAGGTTGAGTCATCT 1572087 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || || |||||||||||||||||||| || || || Sbjct 1572088 GACTCGATTGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1572147 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | |||||| ||||||| | ||||| ||||| Sbjct 1572148 CAGCGTCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAAT 1572207 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 1572208 ATCCAGAAGGAGTCCACCCTCCAT 1572231 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || ||||| || || |||| || ||||| || | | Sbjct 1571800 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCT 1571859 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || || |||||||||||||||||||| || || || Sbjct 1571860 GACTCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1571919 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | || ||| |||||| |||| || |||||| Sbjct 1571920 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1571979 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| ||| | || |||| || ||| Sbjct 1571980 ATCCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGCCTGCGTGGTGGT 1572027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| || || || || | | Sbjct 1572256 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCT 1572315 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||| ||||||||||| || || || || || Sbjct 1572316 GACTCCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 1572375 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| || || | || || |||||| Sbjct 1572376 CAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAAC 1572435 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || ||||| || || ||| | ||| | || | || | || || ||||| Sbjct 1572436 ATCCAAAAGGAGTCGACCCTCCATCTTGTCCTCCGTCTTCGTGGCGGTTT 1572485 >seq47 Length=1968370 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || | || | ||||| ||| | | Sbjct 81064 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACTATTACGTTGGAAGTTGAATCGTCT 81005 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || |||||||||||||| || ||||| || ||||| Sbjct 81004 GACACAATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 80945 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| ||||| |||| || |||||| Sbjct 80944 CAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCGGACTACAAC 80885 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| || | ||||| || |||| || ||||| || Sbjct 80884 ATTCAAAAGGAATCGACGCTGCATTTGGTGCTGCGCTTACGCGGCGG 80838 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || |||||||| || || | Sbjct 81292 ATGCAGATCTTCGTCAAGACACTTACCGGAAAGACTATAACCCTTGAAGTCGAGTCCTCT 81233 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| |||||||| || || || || || || Sbjct 81232 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAG 81173 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||||||||| | ||||| |||||| |||| ||||||||| Sbjct 81172 CAGCGTCTGATCTTTGCCGGCAAACAACTCGAGGACGGTCGCACCCTCTCGGATTACAAC 81113 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||||| ||| | ||| Sbjct 81112 ATTCAGAAGGAATCGACCCTCCAT 81089 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || | || | || || ||| | | Sbjct 80836 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATCATCT 80777 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || || || || || || ||||| || || ||| Sbjct 80776 GATACGATCGATAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAA 80717 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | ||||| || || | || || ||||| Sbjct 80716 CAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTACAAT 80657 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || ||||| | ||||| || |||| |||| || || Sbjct 80656 ATTCAAAAGGAGTCCACGCTGCATTTGGTCCTGCGTCTGCGTGGCGG 80610 >seq45 Length=2374188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117069 GCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATC 117128 ||||| || ||| || || || ||||| || ||| ||||| |||| |||| || Sbjct 1436188 GCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCCTCCATCTTTTGGCTC 1436247 Query 117129 AAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAA 117188 |||| ||||| ||||| ||||| || || |||||||| | || |||||||||||| Sbjct 1436248 AAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTCATCTCGCGTGACGAA 1436307 Query 117189 GGTTTACACACCGATTTTGCGTG 117211 ||| | |||||||| ||||| || Sbjct 1436308 GGTCTCCACACCGACTTTGCTTG 1436330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727749343685