Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 268 2e-66 seq3 250 5e-61 seq4 143 5e-29 seq45 136 8e-27 >seq12 Length=4600585 Score = 268 bits (296), Expect = 2e-66 Identities = 692/1047 (66%), Gaps = 23/1047 (2%) Strand=Plus/Plus Query 279327 GAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386 ||| ||||| ||| ||||||||||| || ||||||| ||||||||||| || ||| Sbjct 4524451 GAGGAGGAGGATGATGAGGGTGAGGATCTCTGCAACTGTGAGTTCTCGCTCGCCTACGGT 4524510 Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446 | ||||||||||| ||| ||| ||| |||||||||| || ||||||||| Sbjct 4524511 GCCAAGATTCTGCTCAACCGTACTGCTCTCCGTCTCAAGCGTGGTCGTCGTTATGGTCTC 4524570 Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506 ||||| ||| || |||||| |||||| |||||||||||||| |||| ||| | Sbjct 4524571 TGCGGTCACAACGGCTGTGGTAAGTCCACTCTCATGCGCGCCATTGCCAACGAGCAGGTC 4524630 Query 279507 GAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || || || ||| | |||||| | | ||| || || || ||||||||||| ||| Sbjct 4524631 GAGGGCTTCCCTCCCAAGTCTGAGCTCAAGACCGTCTACGTCGAGCACGACATTGACGGT 4524690 Query 279567 TCTCTCTCGGATAGCACTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATC 279626 || | |||| | | | | |||||| | |||| | | ||| | | || | | Sbjct 4524691 TCCGAGGCCGATACCCCCATTGTTGACTTCAT--CGTC-GCCTCCGAGGGTGTTGAGACC 4524747 Query 279627 AGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGT 279686 | | ||| | | ||| || | ||||||| || ||| Sbjct 4524748 AAGGACCGTGACCAGGTTGAGAAGATCCTCCGCGAGTATGGTTTCTCCGAGGAGATGATC 4524807 Query 279687 AA-TCT--GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGC 279743 || || ||| | ||| | || || |||||||||||||||||||| ||||| | || Sbjct 4524808 AAGTCCAAGCCCATCGGTGCCCTTTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGT 4524867 Query 279744 GCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACC 279803 ||||| | || ||||| | || || || || ||||| || ||||| ||||| Sbjct 4524868 GCCATGTTGATGAACGCCGACATTCTGCTTCTGGACGAGCCTACTAACCATTTGGACGTT 4524927 Query 279804 ACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATT 279863 |||||| |||||||| | | |||||| || |||||| || | ||| |||| Sbjct 4524928 GTCAACGTTGCCTGGCTCGAGAACTACCTCCTTGGTTTGAAGACCGTCACCTCCATCATC 4524987 Query 279864 GTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923 || || ||||||||||| ||||| || ||| ||||||| |||||| || || || | Sbjct 4524988 GTTTCCCACGACTCTGGTTTCCTTGACCACGTCTGCTCTGACATCATCCATTACGAAAAG 4525047 Query 279924 AATCTGAAGCTCTCCAAGC---ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCT 279980 || |||||| |||| || || ||||| || | ||||| ||| ||| Sbjct 4525048 AACTACAAGCTC---AAGCGTTACGGTGGTAACCTCTCCGAGTTCGTCAAGAAGGTCCCC 4525104 Query 279981 GAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCA 280040 | || || |||||||| || ||||| | ||||| |||||| ||||| Sbjct 4525105 GCTGCCGCTGCCTACTACTCGCTTGAGGACTCGCAGTTCAAGTTCAGATTCCCCGAGCCC 4525164 Query 280041 GGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCC 280100 || | || ||||| |||| | ||||| || || ||| | ||| | |||| | Sbjct 4525165 GGTATGCTTGAGGGTATCAAGACCAAGGAGCGTGCCATCGTCAAGATGAAGAACGTCGAC 4525224 Query 280101 TTTGCTTATCCCAATGGCCCCAA----CATCTTCAGCAGTGTCAACTC---GCAGGTTTC 280153 || || ||| | |||| || || || | || ||| |||| || Sbjct 4525225 TTCCAGTACCCCGGCTCCGCCAAGAAGCAGCTCAAGAA----CATCTCCATGCAGTGCTC 4525280 Query 280154 TATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAA 280213 | || || ||| ||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 4525281 GCTCGCTTCGCGTGTTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCCACCCTTATCAA 4525340 Query 280214 AGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCG 280273 |||| || || ||| | || | | || ||||| ||||||||||||||| | || Sbjct 4525341 GCTCCTTACCGGTGAGCTCGAGTCTGACGTCGGTTCCGTCTGGAAGCATCCCAACCTCCG 4525400 Query 280274 GATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 || || |||||||| ||||||||||||||||| || ||||| ||||||||| || || Sbjct 4525401 TATCGCCTACGTCGCCCAGCACGCTTTCCACCATATTGAGAAGCACCTGGACTCTACCCC 4525460 Query 280334 TAACCAATACATTCAGTGGCGCTATGC 280360 ||| | ||||| |||||||| || || Sbjct 4525461 CAACGAGTACATCCAGTGGCGTTACGC 4525487 >seq3 Length=1474401 Score = 250 bits (276), Expect = 5e-61 Identities = 698/1050 (66%), Gaps = 31/1050 (3%) Strand=Plus/Minus Query 279329 GAAGGAGAC--TGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386 |||| |||| |||| |||||||| || || ||||||| ||||||||||| || ||| Sbjct 788955 GAAGAAGACGATGAGGAGGGTGAGGACCTCTGCAACTGTGAGTTCTCGCTCGCCTACGGT 788896 Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446 | ||||| || | ||| || ||| ||||||||||| || |||||||| Sbjct 788895 GCCAAGATCCTCTTGAACCGCACTGCTCTCCGTCTCAAGCGTGGCCGTCGCTATGGTCTT 788836 Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506 ||| | ||| || || ||| ||||| ||||| ||||| ||||||| ||| || Sbjct 788835 TGCGGCCACAACGGCTGTGGCAAGTCGACTCTCATGCGTGCCATCGCAAACGAGCAGGTG 788776 Query 279507 GAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || ||||| || | || || | | ||| ||||| || |||||||| || ||| Sbjct 788775 GATGG-TTTCCCGCCGAAGTCCGAACTCAAGACCGTGTACGTTGAGCACGATATTGACGG 788717 Query 279566 CTCTCTCTCGGATA-GCACTGTGTTCGACTTCCTAACGTCTGACAATCAG--GTTATGGA 279622 ||| |||||| || || || | ||||| || | ||| |||| | | | || Sbjct 788716 CTCCGAGGCGGATACGCCCT-TGGTGGACTT--TATCATCTCC---TCAGACGGTGTCGA 788663 Query 279623 AATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAAT 279682 | || | ||| || | | ||| || | | || || ||| || Sbjct 788662 GACCAAGGACCGTGATCAAGTTGCCAAGATCCTTCGCGAGTACGGCTTCTCGGAAGAGAT 788603 Query 279683 G--CGT-AATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCAC 279739 | || || | || | || ||||||| ||||| ||||||||||| ||||| ||| | Sbjct 788602 GGTCGCCAAGCAACCTATCGGCGCTCTGTCCGGTGGCTGGAAGATGAAACTGGCACTCGC 788543 Query 279740 TCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 |||||||| ||| || || ||| || | ||||||||||||| || ||||| |||| Sbjct 788542 CCGCGCCATGCTAATGAACGCGGATATCTTGTTGCTTGATGAGCCTACTAACCATCTGGA 788483 Query 279800 CACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCT 279859 ||| || || ||||| | | |||||| |||| |||| ||| | ||| | Sbjct 788482 TGTTGTCAATGTTGCATGGCTCGAGAACTACCTTCTTGGTCTCAAGACTGTCACATCCAT 788423 Query 279860 CATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 ||| ||||| ||||||||||| ||||| || ||| ||||||| ||||| || || || Sbjct 788422 CATCGTCTCCCACGACTCTGGTTTCCTTGACCACGTCTGCTCTGATATCATCCATTACGA 788363 Query 279920 GCAAAATCTGAAGCTCTCCAAGC---ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCG 279976 | | || |||||| |||| ||| ||||||||||| | || || ||| Sbjct 788362 GAAGAACTACAAGCTC---AAGCGCTACAAGGGCAACCTGTCCGAGTTTGTCAAGAAGGT 788306 Query 279977 CCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCA-AGTGGGAATTCCCTG 280035 ||| ||| ||||| |||||| || | ||| | | || | || ||||| | Sbjct 788305 GCCTTCGGCCGCCGCTTACTATTCGCTCGAAGAC-ACGCAGCTATCGTTCCGCTTCCCCG 788247 Query 280036 AGCCAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG 280095 |||| || | || ||||| |||| | ||||| ||||| ||| | ||| | || Sbjct 788246 AGCCGGGTCTGCTCGAGGGTATCAAGACCAAGGAGCGCGCCATCGTCAAGATGAAGAACG 788187 Query 280096 TCTCCTTTGCTTATCC---CAATGGCCCCAA-CATCTTCAGCAGTGTCAACTCGCAGGTT 280151 || ||| || || || || || || || || | ||| | |||| Sbjct 788186 TCGACTTCCAGTACCCGGGCACGGGTAAGAAGCAGCTGAAG-AACATCAGCATGCAGTGC 788128 Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 || || ||||| | | |||||||| ||||| ||||| || ||||| || || ||| Sbjct 788127 TCGCTGTCTTCACGTGTCGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCCACTCTCATC 788068 Query 280212 AAAGTCCTGACTGGCGAGA-CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACAT 280270 || | |||||||| || | |||||| | || || || ||||| || |||||| | Sbjct 788067 AAGCTACTGACTGGTGAAATGGAAGGCCAGACA-GGCTCTGTATGGAAACACCCCAACTT 788009 Query 280271 GCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGAC 280330 ||| || || || ||||| ||||| ||||||||||| || ||||| || || ||| || Sbjct 788008 GCGCATTGCCTATGTCGCGCAGCATGCTTTCCACCATATTGAGAAGCATCTCGACTCTAC 787949 Query 280331 TCCTAACCAATACATTCAGTGGCGCTATGC 280360 || ||| | |||||||||||||||||||| Sbjct 787948 GCCCAACGAGTACATTCAGTGGCGCTATGC 787919 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||||||||| ||||| || ||| ||||| | | |||||| || | || ||||||||| Sbjct 787410 GTCAAACTTGTGATCGGCGCTGCTATGTGGAACCGTCCTCACATGCTTGTCCTCGACGAG 787351 Query 280800 CCTACCAACTATCTGGACCGCGA 280822 |||||||||||| |||| ||||| Sbjct 787350 CCTACCAACTATTTGGATCGCGA 787328 >seq4 Length=1091825 Score = 143 bits (158), Expect = 5e-29 Identities = 444/679 (65%), Gaps = 31/679 (5%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || ||||| |||||||||||||| ||||| |||| || || || || Sbjct 174922 GGTTCGCTTTCAGGTGGCTGGAAGATGAAGCTCGCCCTGGCTCGGGCAATGCTCATGAAC 174981 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| || | ||||| || || || |||||||| | ||| | ||||| || ||| Sbjct 174982 GCCGATATCTTGCTGCTCGACGAACCGACCAACCATCTCGACGTCGTTAACGTGGCATGG 175041 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||| | | | |||||| || | ||| || | || || |||||||| Sbjct 175042 CTCGAGAACTACTTGCTCGGCTTGAAGAGCGTGACATCCATCGTCGTGTCGCACGACTCG 175101 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG--CAA----AATCTGAAG 279932 || ||||| || | | || || | ||||| || || ||| ||| || || ||| Sbjct 175102 GGTTTCCTCGACCACATTTGTTCGGATATCATCCATTACGAGGGCAACTACAAACTCAAG 175161 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 | || |||| || || ||||| | || || ||| ||| ||| || Sbjct 175162 CGCTACAAG------GGTAATCTGTCCGAATTTGTCAAGAAGGTCCCGCGCGCGCAGTCC 175215 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAG--TGGGAATTCCCTGAGCCAGGGTTTCTGG 280050 ||||| || ||| ||| | | | | || ||||| |||||||| | || | Sbjct 175216 TACTACTCGCTCGAGGCGGCC-CAGATTACCTTTAGATTTCCC-GAGCCAGGCATGCTCG 175273 Query 280051 AGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 |||| ||| | ||||| ||||| || | || | | || ||| | || | Sbjct 175274 AGGGTGTCAAGACGAAGGAGCGCGCCATTCTCAAAATGAAGGATGTGGACTTCTCGTACC 175333 Query 280111 CCAATGGCCCCAACATCTTCAGCAGTGTCAACTCG--CAGGTTTCTATGAAC-------T 280161 || ||| | ||| | ||||| |||| | || | | ||| | | Sbjct 175334 CC---GGCTCGAACCGCA--AGCAGC-TCAAAAAGATCACAATGCAATGCTCGCTCGCGT 175387 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || | | ||||||||| || || ||||| || ||||| || || ||||| | |||| Sbjct 175388 CGCGCGTCGCTGTCATTGGTCCGAACGGTGCAGGCAAGTCAACACTTATCAAGTTGCTGA 175447 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || || | || || | || ||||||||||||||| |||| || || | Sbjct 175448 CGGGTGAGCTCGAGCCCTCGGAAGGTACGGTGTGGAAGCATCCCAACCTGCGCATTGCCT 175507 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 | || || ||||| |||||||| || || ||||| || ||||| || || || ||| ||| Sbjct 175508 ATGTTGCGCAGCATGCTTTCCATCATATTGAGAAGCATCTGGATATTACGCCAAACGAAT 175567 Query 280342 ACATTCAGTGGCGCTATGC 280360 | ||||| ||||| ||||| Sbjct 175568 ATATTCAATGGCGTTATGC 175586 >seq45 Length=2374188 Score = 136 bits (150), Expect = 8e-27 Identities = 318/473 (67%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||| || || ||||| ||||| || ||||| || | ||||||| Sbjct 1436636 TTCATAACACCAGCACGCTGGTAATCAGAGACACGCTTCTCAAAGAAGTTGGTCTTGCCC 1436577 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTG-GGATG 251642 | |||||||| | ||||| |||||||||||||| || || ||||| |||| ||| Sbjct 1436576 TGGAGAGAGATCATGTCCATAAAGTCGAAGGGGTTGGTAGCCTTGTAGAACTTGTCGAT- 1436518 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 ||| || | |||| || ||||| || |||||||| | || || | ||| || | Sbjct 1436517 GCCGAGCGAGACGAGGAGACGGTCAGCGACAAACTCAATGTATTGGCACATGAGAGTCGC 1436458 Query 251703 GTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAA 251761 ||||||||| |||| | |||| || | || | ||| ||||||||| | | | Sbjct 1436457 GTTCATGCCGATCAGAGCGAC-GGGCAAAGCGGTGGTCAGGAACTCCTTTTCGATCTCGA 1436399 Query 251762 CTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 ||||||| | || | || || | ||| | ||||| || | | Sbjct 1436398 CTGCCTCGCGGATGATACCGAGGACACGCTCAGATGGAGGCTGCTTG---CGGAGATGCG 1436342 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 || | ||||| |||| | ||| ||||| ||||| || ||||| ||||||| Sbjct 1436341 AGAAAAGGAGACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGC 1436282 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATC 251938 | | ||| |||||||||| ||||| ||| ||||||| ||||| | | ||| || | Sbjct 1436281 TGAAAGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGC 1436222 Query 251939 CAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAAC 251991 ||||||| | | |||||| ||| | | ||||| | |||||||||||| Sbjct 1436221 CAGAGAAGAAGATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAAC 1436169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836154711209