Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq12 268 2e-66
seq3 250 5e-61
seq4 143 5e-29
seq45 136 8e-27
>seq12
Length=4600585
Score = 268 bits (296), Expect = 2e-66
Identities = 692/1047 (66%), Gaps = 23/1047 (2%)
Strand=Plus/Plus
Query 279327 GAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386
||| ||||| ||| ||||||||||| || ||||||| ||||||||||| || |||
Sbjct 4524451 GAGGAGGAGGATGATGAGGGTGAGGATCTCTGCAACTGTGAGTTCTCGCTCGCCTACGGT 4524510
Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446
| ||||||||||| ||| ||| ||| |||||||||| || |||||||||
Sbjct 4524511 GCCAAGATTCTGCTCAACCGTACTGCTCTCCGTCTCAAGCGTGGTCGTCGTTATGGTCTC 4524570
Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506
||||| ||| || |||||| |||||| |||||||||||||| |||| ||| |
Sbjct 4524571 TGCGGTCACAACGGCTGTGGTAAGTCCACTCTCATGCGCGCCATTGCCAACGAGCAGGTC 4524630
Query 279507 GAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
|| || || ||| | |||||| | | ||| || || || ||||||||||| |||
Sbjct 4524631 GAGGGCTTCCCTCCCAAGTCTGAGCTCAAGACCGTCTACGTCGAGCACGACATTGACGGT 4524690
Query 279567 TCTCTCTCGGATAGCACTGTGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATC 279626
|| | |||| | | | | |||||| | |||| | | ||| | | || | |
Sbjct 4524691 TCCGAGGCCGATACCCCCATTGTTGACTTCAT--CGTC-GCCTCCGAGGGTGTTGAGACC 4524747
Query 279627 AGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAATGCGT 279686
| | ||| | | ||| || | ||||||| || |||
Sbjct 4524748 AAGGACCGTGACCAGGTTGAGAAGATCCTCCGCGAGTATGGTTTCTCCGAGGAGATGATC 4524807
Query 279687 AA-TCT--GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGC 279743
|| || ||| | ||| | || || |||||||||||||||||||| ||||| | ||
Sbjct 4524808 AAGTCCAAGCCCATCGGTGCCCTTTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGT 4524867
Query 279744 GCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACC 279803
||||| | || ||||| | || || || || ||||| || ||||| |||||
Sbjct 4524868 GCCATGTTGATGAACGCCGACATTCTGCTTCTGGACGAGCCTACTAACCATTTGGACGTT 4524927
Query 279804 ACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATT 279863
|||||| |||||||| | | |||||| || |||||| || | ||| ||||
Sbjct 4524928 GTCAACGTTGCCTGGCTCGAGAACTACCTCCTTGGTTTGAAGACCGTCACCTCCATCATC 4524987
Query 279864 GTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAA 279923
|| || ||||||||||| ||||| || ||| ||||||| |||||| || || || |
Sbjct 4524988 GTTTCCCACGACTCTGGTTTCCTTGACCACGTCTGCTCTGACATCATCCATTACGAAAAG 4525047
Query 279924 AATCTGAAGCTCTCCAAGC---ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCT 279980
|| |||||| |||| || || ||||| || | ||||| ||| |||
Sbjct 4525048 AACTACAAGCTC---AAGCGTTACGGTGGTAACCTCTCCGAGTTCGTCAAGAAGGTCCCC 4525104
Query 279981 GAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCA 280040
| || || |||||||| || ||||| | ||||| |||||| |||||
Sbjct 4525105 GCTGCCGCTGCCTACTACTCGCTTGAGGACTCGCAGTTCAAGTTCAGATTCCCCGAGCCC 4525164
Query 280041 GGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCC 280100
|| | || ||||| |||| | ||||| || || ||| | ||| | |||| |
Sbjct 4525165 GGTATGCTTGAGGGTATCAAGACCAAGGAGCGTGCCATCGTCAAGATGAAGAACGTCGAC 4525224
Query 280101 TTTGCTTATCCCAATGGCCCCAA----CATCTTCAGCAGTGTCAACTC---GCAGGTTTC 280153
|| || ||| | |||| || || || | || ||| |||| ||
Sbjct 4525225 TTCCAGTACCCCGGCTCCGCCAAGAAGCAGCTCAAGAA----CATCTCCATGCAGTGCTC 4525280
Query 280154 TATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAA 280213
| || || ||| ||||| || ||||| ||||| || ||||| ||||| |||||
Sbjct 4525281 GCTCGCTTCGCGTGTTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCCACCCTTATCAA 4525340
Query 280214 AGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCG 280273
|||| || || ||| | || | | || ||||| ||||||||||||||| | ||
Sbjct 4525341 GCTCCTTACCGGTGAGCTCGAGTCTGACGTCGGTTCCGTCTGGAAGCATCCCAACCTCCG 4525400
Query 280274 GATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333
|| || |||||||| ||||||||||||||||| || ||||| ||||||||| || ||
Sbjct 4525401 TATCGCCTACGTCGCCCAGCACGCTTTCCACCATATTGAGAAGCACCTGGACTCTACCCC 4525460
Query 280334 TAACCAATACATTCAGTGGCGCTATGC 280360
||| | ||||| |||||||| || ||
Sbjct 4525461 CAACGAGTACATCCAGTGGCGTTACGC 4525487
>seq3
Length=1474401
Score = 250 bits (276), Expect = 5e-61
Identities = 698/1050 (66%), Gaps = 31/1050 (3%)
Strand=Plus/Minus
Query 279329 GAAGGAGAC--TGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGT 279386
|||| |||| |||| |||||||| || || ||||||| ||||||||||| || |||
Sbjct 788955 GAAGAAGACGATGAGGAGGGTGAGGACCTCTGCAACTGTGAGTTCTCGCTCGCCTACGGT 788896
Query 279387 GGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTC 279446
| ||||| || | ||| || ||| ||||||||||| || ||||||||
Sbjct 788895 GCCAAGATCCTCTTGAACCGCACTGCTCTCCGTCTCAAGCGTGGCCGTCGCTATGGTCTT 788836
Query 279447 ATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506
||| | ||| || || ||| ||||| ||||| ||||| ||||||| ||| ||
Sbjct 788835 TGCGGCCACAACGGCTGTGGCAAGTCGACTCTCATGCGTGCCATCGCAAACGAGCAGGTG 788776
Query 279507 GAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| || ||||| || | || || | | ||| ||||| || |||||||| || |||
Sbjct 788775 GATGG-TTTCCCGCCGAAGTCCGAACTCAAGACCGTGTACGTTGAGCACGATATTGACGG 788717
Query 279566 CTCTCTCTCGGATA-GCACTGTGTTCGACTTCCTAACGTCTGACAATCAG--GTTATGGA 279622
||| |||||| || || || | ||||| || | ||| |||| | | | ||
Sbjct 788716 CTCCGAGGCGGATACGCCCT-TGGTGGACTT--TATCATCTCC---TCAGACGGTGTCGA 788663
Query 279623 AATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGAAT 279682
| || | ||| || | | ||| || | | || || ||| ||
Sbjct 788662 GACCAAGGACCGTGATCAAGTTGCCAAGATCCTTCGCGAGTACGGCTTCTCGGAAGAGAT 788603
Query 279683 G--CGT-AATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCAC 279739
| || || | || | || ||||||| ||||| ||||||||||| ||||| ||| |
Sbjct 788602 GGTCGCCAAGCAACCTATCGGCGCTCTGTCCGGTGGCTGGAAGATGAAACTGGCACTCGC 788543
Query 279740 TCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799
|||||||| ||| || || ||| || | ||||||||||||| || ||||| ||||
Sbjct 788542 CCGCGCCATGCTAATGAACGCGGATATCTTGTTGCTTGATGAGCCTACTAACCATCTGGA 788483
Query 279800 CACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCT 279859
||| || || ||||| | | |||||| |||| |||| ||| | ||| |
Sbjct 788482 TGTTGTCAATGTTGCATGGCTCGAGAACTACCTTCTTGGTCTCAAGACTGTCACATCCAT 788423
Query 279860 CATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919
||| ||||| ||||||||||| ||||| || ||| ||||||| ||||| || || ||
Sbjct 788422 CATCGTCTCCCACGACTCTGGTTTCCTTGACCACGTCTGCTCTGATATCATCCATTACGA 788363
Query 279920 GCAAAATCTGAAGCTCTCCAAGC---ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCG 279976
| | || |||||| |||| ||| ||||||||||| | || || |||
Sbjct 788362 GAAGAACTACAAGCTC---AAGCGCTACAAGGGCAACCTGTCCGAGTTTGTCAAGAAGGT 788306
Query 279977 CCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCA-AGTGGGAATTCCCTG 280035
||| ||| ||||| |||||| || | ||| | | || | || ||||| |
Sbjct 788305 GCCTTCGGCCGCCGCTTACTATTCGCTCGAAGAC-ACGCAGCTATCGTTCCGCTTCCCCG 788247
Query 280036 AGCCAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCG 280095
|||| || | || ||||| |||| | ||||| ||||| ||| | ||| | ||
Sbjct 788246 AGCCGGGTCTGCTCGAGGGTATCAAGACCAAGGAGCGCGCCATCGTCAAGATGAAGAACG 788187
Query 280096 TCTCCTTTGCTTATCC---CAATGGCCCCAA-CATCTTCAGCAGTGTCAACTCGCAGGTT 280151
|| ||| || || || || || || || || | ||| | ||||
Sbjct 788186 TCGACTTCCAGTACCCGGGCACGGGTAAGAAGCAGCTGAAG-AACATCAGCATGCAGTGC 788128
Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211
|| || ||||| | | |||||||| ||||| ||||| || ||||| || || |||
Sbjct 788127 TCGCTGTCTTCACGTGTCGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCCACTCTCATC 788068
Query 280212 AAAGTCCTGACTGGCGAGA-CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACAT 280270
|| | |||||||| || | |||||| | || || || ||||| || |||||| |
Sbjct 788067 AAGCTACTGACTGGTGAAATGGAAGGCCAGACA-GGCTCTGTATGGAAACACCCCAACTT 788009
Query 280271 GCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGAC 280330
||| || || || ||||| ||||| ||||||||||| || ||||| || || ||| ||
Sbjct 788008 GCGCATTGCCTATGTCGCGCAGCATGCTTTCCACCATATTGAGAAGCATCTCGACTCTAC 787949
Query 280331 TCCTAACCAATACATTCAGTGGCGCTATGC 280360
|| ||| | ||||||||||||||||||||
Sbjct 787948 GCCCAACGAGTACATTCAGTGGCGCTATGC 787919
Score = 87.8 bits (96), Expect = 4e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799
||||||||||| ||||| || ||| ||||| | | |||||| || | || |||||||||
Sbjct 787410 GTCAAACTTGTGATCGGCGCTGCTATGTGGAACCGTCCTCACATGCTTGTCCTCGACGAG 787351
Query 280800 CCTACCAACTATCTGGACCGCGA 280822
|||||||||||| |||| |||||
Sbjct 787350 CCTACCAACTATTTGGATCGCGA 787328
>seq4
Length=1091825
Score = 143 bits (158), Expect = 5e-29
Identities = 444/679 (65%), Gaps = 31/679 (5%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
||||| || || ||||| |||||||||||||| ||||| |||| || || || ||
Sbjct 174922 GGTTCGCTTTCAGGTGGCTGGAAGATGAAGCTCGCCCTGGCTCGGGCAATGCTCATGAAC 174981
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| || | ||||| || || || |||||||| | ||| | ||||| || |||
Sbjct 174982 GCCGATATCTTGCTGCTCGACGAACCGACCAACCATCTCGACGTCGTTAACGTGGCATGG 175041
Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878
|| | | |||| | | | |||||| || | ||| || | || || ||||||||
Sbjct 175042 CTCGAGAACTACTTGCTCGGCTTGAAGAGCGTGACATCCATCGTCGTGTCGCACGACTCG 175101
Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG--CAA----AATCTGAAG 279932
|| ||||| || | | || || | ||||| || || ||| ||| || || |||
Sbjct 175102 GGTTTCCTCGACCACATTTGTTCGGATATCATCCATTACGAGGGCAACTACAAACTCAAG 175161
Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992
| || |||| || || ||||| | || || ||| ||| ||| ||
Sbjct 175162 CGCTACAAG------GGTAATCTGTCCGAATTTGTCAAGAAGGTCCCGCGCGCGCAGTCC 175215
Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAG--TGGGAATTCCCTGAGCCAGGGTTTCTGG 280050
||||| || ||| ||| | | | | || ||||| |||||||| | || |
Sbjct 175216 TACTACTCGCTCGAGGCGGCC-CAGATTACCTTTAGATTTCCC-GAGCCAGGCATGCTCG 175273
Query 280051 AGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110
|||| ||| | ||||| ||||| || | || | | || ||| | || |
Sbjct 175274 AGGGTGTCAAGACGAAGGAGCGCGCCATTCTCAAAATGAAGGATGTGGACTTCTCGTACC 175333
Query 280111 CCAATGGCCCCAACATCTTCAGCAGTGTCAACTCG--CAGGTTTCTATGAAC-------T 280161
|| ||| | ||| | ||||| |||| | || | | ||| | |
Sbjct 175334 CC---GGCTCGAACCGCA--AGCAGC-TCAAAAAGATCACAATGCAATGCTCGCTCGCGT 175387
Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221
| || | | ||||||||| || || ||||| || ||||| || || ||||| | ||||
Sbjct 175388 CGCGCGTCGCTGTCATTGGTCCGAACGGTGCAGGCAAGTCAACACTTATCAAGTTGCTGA 175447
Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281
| || ||| | || || | || || | || ||||||||||||||| |||| || || |
Sbjct 175448 CGGGTGAGCTCGAGCCCTCGGAAGGTACGGTGTGGAAGCATCCCAACCTGCGCATTGCCT 175507
Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341
| || || ||||| |||||||| || || ||||| || ||||| || || || ||| |||
Sbjct 175508 ATGTTGCGCAGCATGCTTTCCATCATATTGAGAAGCATCTGGATATTACGCCAAACGAAT 175567
Query 280342 ACATTCAGTGGCGCTATGC 280360
| ||||| ||||| |||||
Sbjct 175568 ATATTCAATGGCGTTATGC 175586
>seq45
Length=2374188
Score = 136 bits (150), Expect = 8e-27
Identities = 318/473 (67%), Gaps = 10/473 (2%)
Strand=Plus/Minus
Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583
||||| ||||| | ||| || || ||||| ||||| || ||||| || | |||||||
Sbjct 1436636 TTCATAACACCAGCACGCTGGTAATCAGAGACACGCTTCTCAAAGAAGTTGGTCTTGCCC 1436577
Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTG-GGATG 251642
| |||||||| | ||||| |||||||||||||| || || ||||| |||| |||
Sbjct 1436576 TGGAGAGAGATCATGTCCATAAAGTCGAAGGGGTTGGTAGCCTTGTAGAACTTGTCGAT- 1436518
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
||| || | |||| || ||||| || |||||||| | || || | ||| || |
Sbjct 1436517 GCCGAGCGAGACGAGGAGACGGTCAGCGACAAACTCAATGTATTGGCACATGAGAGTCGC 1436458
Query 251703 GTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAA 251761
||||||||| |||| | |||| || | || | ||| ||||||||| | | |
Sbjct 1436457 GTTCATGCCGATCAGAGCGAC-GGGCAAAGCGGTGGTCAGGAACTCCTTTTCGATCTCGA 1436399
Query 251762 CTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
||||||| | || | || || | ||| | ||||| || | |
Sbjct 1436398 CTGCCTCGCGGATGATACCGAGGACACGCTCAGATGGAGGCTGCTTG---CGGAGATGCG 1436342
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
|| | ||||| |||| | ||| ||||| ||||| || ||||| |||||||
Sbjct 1436341 AGAAAAGGAGACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGC 1436282
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATC 251938
| | ||| |||||||||| ||||| ||| ||||||| ||||| | | ||| || |
Sbjct 1436281 TGAAAGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGC 1436222
Query 251939 CAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAAC 251991
||||||| | | |||||| ||| | | ||||| | ||||||||||||
Sbjct 1436221 CAGAGAAGAAGATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAAC 1436169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836154711209
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