Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq47 340 3e-88 seq45 251 1e-61 >seq47 Length=1968370 Score = 340 bits (376), Expect = 3e-88 Identities = 1092/1676 (65%), Gaps = 60/1676 (4%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 || ||||||||||| |||||||| || | |||| | | | |||||| |||||| Sbjct 705143 AGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTCAGT 705202 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 || | || |||||| |||| | ||||| ||| || ||||||||| Sbjct 705203 TTGCCAA-----AG--TTGGGT-----TCGCCAATAAAGATGTTTAGACTTTGGCTCTGG 705250 Query 243896 TCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGT--CCTTCTGAGATATCTCA 243952 || | |||| |||| || || || |||||| |||| | | || |||| || || Sbjct 705251 TCAATAAAGG-CGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTGCGAGAGTTCCCA 705309 Query 243953 TACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAG 244012 |||| |||||||||| || ||||| | ||||||| |||| ||| | ||| Sbjct 705310 TACG--GTCTTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAG 705367 Query 244013 CCCTTGT-GGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAG 244071 || |||| |||| |||| | | | | | |||||||||||||||| | |||| Sbjct 705368 CCATTGTCGGAC-ATGATCATGTTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAG 705426 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 ||| || || | ||| || | || || || || | || ||||| || ||| Sbjct 705427 ATCCTTGAGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTA 705486 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 |||||| || || |||| || || || |||||| ||||||| || || Sbjct 705487 CAGGTTGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGC 705546 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT 244251 |||||||||||| | ||||||||| ||| | || ||| | || | | | | || Sbjct 705547 AGTCGGCATGGGTGCCACCAGCAGCGAGTTACGCAAGCCA-GTCTGCGCAATCTTGGCCT 705605 Query 244252 -GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||| | ||||||||| | | | | ||| || |||| ||| | |||| Sbjct 705606 TGAGGGCAGCCCAGTCCCATAGATCGGTG-GGTG-TCACGTT-------CCAGAAGTCAT 705656 Query 244311 ACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 |||||| | |||||| |||| ||||| || ||||| |||| ||||||||||| | Sbjct 705657 ACTGCAAGACGCCCTTG--GACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAG 705714 Query 244369 CTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 || |||| | | || || ||||| | |||||||||||| |||||| | Sbjct 705715 GACCGCGAGCTCGTTGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACT 705774 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | | ||||| | || || ||| || ||||| ||| ||| | ||||| Sbjct 705775 GTTGAGTTTCTTGGCCTCGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGC 705834 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 || || | || || | |||||||| | || ||| |||| |||||| ||||| || Sbjct 705835 AAGACCGTTGACACCTAGACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGG 705894 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608 ||| || || ||||| |||||| | |||||| | |||||| || | | ||| || Sbjct 705895 CACAGGATAGTAGTTGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAAC 705954 Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668 ||| || | || || || || | | | ||| || | | | |||| | ||| Sbjct 705955 ATCGTGCAACTTTTGGAAATCAAACACTTCGCGATTCTTGACAAAGGTGGGC-----AAA 706009 Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTG 244728 || | ||||||| ||||| || || || || |||| ||| ||||| Sbjct 706010 ----------GCCAGACTGGCCAAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTC 706059 Query 244729 GACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTT 244788 ||| ||||| || ||||| || ||||||||||| ||||||| || ||| || || || || Sbjct 706060 GACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTT 706119 Query 244789 GGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAG 244848 | ||| || ||||||||||| ||||||||||| || || |||||| || || | | Sbjct 706120 GCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAA 706179 Query 244849 GACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 || | | |||||| | | |||||||| ||| || || || ||||| Sbjct 706180 GATGGCATACCAGAGCTTCTGTGCCTTGACAACTTGGCGCGCGCGACCTTCACGTTCGTA 706239 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC 244968 | |||||| |||| |||| |||||| ||||||| || || || | ||| Sbjct 706240 TTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGTGAAGACCTGGTG-CTTCGC 706298 Query 244969 C-GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGA 245027 ||||| | | ||||| || || || | ||| | || |||||| || || |||| Sbjct 706299 TTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGA 706358 Query 245028 TCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCA 245087 |||| | ||| | ||| ||||| | | | | ||| ||| ||| |||||||| | | Sbjct 706359 TCCATAAGGCATAGAACAGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGA 706418 Query 245088 GCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGG 245147 | |||| || || || || |||||||||||| | ||||| |||| || || | Sbjct 706419 GGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCG 706478 Query 245148 GCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAG-CGCG---TTGAAGATGCGCAGG 245203 | ||||||||||| || || || | | | |||| || | ||| | | ||| || Sbjct 706479 GGCGCTTGTTGCCACCTTGATCGA----CATAGCGAGCCGTGTTATTGTAAACGCGGAGC 706534 Query 245204 GTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG 245263 ||||||| |||||||| || | || ||||| || |||||| | ||| ||| | Sbjct 706535 ATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGG 706594 Query 245264 AGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTG 245323 | | | |||| | || | || || ||| |||||| || ||| ||| | || Sbjct 706595 ATCTGGTGGATGTTGAGACCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTC 706654 Query 245324 ATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGAC 245383 | || || ||||| || || ||| ||||||| | | || ||||||||| ||| Sbjct 706655 AGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGAC 706714 Query 245384 AGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| || ||| | | | ||||||||| ||||| || |||||||||||||| Sbjct 706715 AGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTA 706770 >seq45 Length=2374188 Score = 251 bits (278), Expect = 1e-61 Identities = 377/522 (72%), Gaps = 24/522 (5%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA--CGCAA 42690 |||||||||||||||||||| || ||||| |||| |||||| ||| | || Sbjct 1436113 CCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATC-----TCCTCAAACGGTG 1436167 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 ||| | ||| | |||| || ||| | || || ||||| ||||||||||| ||| | | Sbjct 1436168 TGTTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGT 1436227 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 | ||||||||||| ||||||||| || ||| | |||||| || || || ||| ||| Sbjct 1436228 TTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCT-GATGCCTGGTCTGACTTTCAGCAAC 1436286 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | ||||| || || || | |||||||| || ||||| |||||| Sbjct 1436287 GAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCG--- 1436343 Query 42870 CACCTCAGGCACAAGC--CCTCGA-AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 || ||| | ||||| |||| | ||||| |||| | |||||| ||||| || Sbjct 1436344 CATCTC---CGCAAGCAGCCTCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTC 1436400 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGC--TGCCCGTGTCCCTGGTCGGCATGAACC 42984 |||||||| ||||||||||| || || ||| ||||||| | ||| |||||||||| | Sbjct 1436401 GAGATCGAAAAGGAGTTCCTGAC-CA-CCGCTTTGCCCGTCGCTCTGATCGGCATGAA-C 1436457 Query 42985 ACGAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 |||| ||||||||| | ||||| ||| ||||| |||| |||||| | | | || Sbjct 1436458 GCGACTCTCATGTGCCAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGC 1436517 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||||| | | |||||||||||||||||| | ||||| | || Sbjct 1436518 ATCGACAAGTTCTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAG 1436577 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| || |||||||| ||| | || |||||| Sbjct 1436578 GGCAAGACCAACTTCTTTGAGAAGCGTGTCTCTGATTACCAG 1436619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338621592240