Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq23 100 2e-16 >seq23 Length=2864373 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| ||||| || ||| ||||||||| ||||||||||| | | || Sbjct 1571561 AGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGG 1571502 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| |||||||| ||||| || ||||||||||||||| || | || ||| Sbjct 1571501 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCC 1571442 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 ||||| ||| || ||||| | | ||| | | || | ||| ||| ||| | || Sbjct 1571441 TTGTCTTGAATCTTCTGCTTGA-CGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGT 1571383 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATG 34137 || || || ||||| || || || || || || ||||| ||| |||| Sbjct 1571382 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTTTGGTATG 1571334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062162879298