Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 194 4e-44 seq3 170 4e-37 seq12 150 4e-31 seq49 91.5 3e-13 seq45 86.0 1e-11 >seq4 Length=1091825 Score = 194 bits (214), Expect = 4e-44 Identities = 696/1068 (65%), Gaps = 69/1068 (6%) Strand=Plus/Minus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 ||||||||||| ||||||||||||||| ||||| | ||| || || || || ||||| | Sbjct 175599 GTCTTCACCGGTGGCATAACGCCATTGAATATATTCGTTTGGCGTAATATCCAGATGCTT 175540 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 ||| || || |||||||||||||| || || || |||| |||| || ||||||||||| Sbjct 175539 CTCAATATGATGGAAAGCATGCTGCGCAACATAGGCAATGCGCAGGTTGGGATGCTTCCA 175480 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCC 333499 || | || | | || || | | ||||| |||| ||| || || || || || Sbjct 175479 CACCGTACCTTCCGAGGGCTCGAGCTCACCCGTCAGCAACTTGATAAGTGTTGACTTGCC 175420 Query 333500 CGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 333559 ||||| || || | ||| | | | || ||||| ||||| | || Sbjct 175419 TGCACCGTTCGGACCAATGACAGCGACGCGCGACGCGAGCGA-------GCATTG-CATT 175368 Query 333560 GTCAAAGATT--AGTT--TTTCCGTAC----CCGGATACTTGAACCCCACACCGCGTAGC 333611 || | || || | || | || | | || ||| ||| ||||| | | Sbjct 175367 GTGATCTTTTTGAGCTGCTTGCGGTTCGAGCCGGGGTACGAGAAGTCCACATCCTTCATT 175308 Query 333612 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 333671 || | ||||| || ||||||| ||| ||||||||| | || |||||||| || | Sbjct 175307 TTGAGAATGGCGCGCTCCTTCGTCTTGACACCCTCGAGCATGCCTGGCTCGGGAAATCTA 175248 Query 333672 CACGTGGTCTT---CGTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTTCT 333726 | || ||| || |||| || | |||||| ||| || |||||| ||||| Sbjct 175247 AAGGTAATCTGGGCCGCCTCG---AGCGAGTAGTAGGACT-GCGCGCGCGGGAC-CTTCT 175193 Query 333727 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 333786 | || || ||||||||||| |||||||| ||| || || ||| |||||||||| Sbjct 175192 TGACAAATTCGGACAGATTACCCTTGTAGCGCTTGAGTTTGTAGTTGCCCTCGTAATGGA 175133 Query 333787 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 333846 | ||| | |||| ||||||||| || |||||||| ||||| | | | | | | Sbjct 175132 TGATATCCGAACAAATGTGGTCGAGGAAACCCGAGTCGTGCGACACGACGATGGATGTCA 175073 Query 333847 CGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGATG 333904 || ||| | | || || ||| ||| || ||||| ||||||| || ||||| Sbjct 175072 CGCTCTTCAAGCCGAGCAAGTAGTTC--TCGAGCCATGCCACGTTAACGACGTCGAGATG 175015 Query 333905 GTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGC 333964 ||||||||| ||||| || || | | | ||||||| ||||||||| || || || || Sbjct 175014 GTTGGTCGGTTCGTCGAGCAGCAAGATATCGGCGTTCATGAGCATTGCCCGAGCCAGGGC 174955 Query 333965 GAGTTTCATTTTCCACCCTCCTGAAAGAG------TGTTAATTGGGGCAGATTGGCGCTC 334018 ||| ||||| ||||| || |||||||| | |||| |||| | ||| | Sbjct 174954 GAGCTTCATCTTCCAGCCACCTGAAAGCGAACCGATGTT--TTGG---AACTTG----AC 174904 Query 334019 AATATCAAAGC-CAACCGATTCTAG---AGTAGTTACGATCTTTTCACGAGACCAAATGT 334074 ||||| || |||| || | | || |||| | ||| | | | | Sbjct 174903 CATATCCTCGCTGAACCCATATTCGCGCAGCAGTTTTGCGATTT----GGGCC------T 174854 Query 334075 TTTCCTTTACTTGTTCATCAT------TGGCAATGAAGTCAATGATAGCCATGTTAGAAT 334128 | |||||| | || ||| ||||||||||| | || || | | || | Sbjct 174853 TGTCCTTTTCGACCACACCATGAGAGGACGCAATGAAGTCCACGAGGCCCGTCTCGGACT 174794 Query 334129 CGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAA-CATCCGCAGAGGGGAAC 334187 | || || || | || || || || || | || ||||||| | ||| | ||||| Sbjct 174793 CAGAACCATCAATGTCATGCTCAACATAGACCGTCTTCAAAATCGAGCGC-GGCGGGAAG 174735 Query 334188 CCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGC 334247 || || ||||| |||| | || |||||||||| || ||||| || || || || Sbjct 174734 CCCTCGAGCTGCTCGTTGGCGATGGCGCGCATCAACGTCGATTTGCCGCAACCATTGGGA 174675 Query 334248 CCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC-GTATTGTTCAGAAGAAT 334306 || ||||| || ||||| |||||||| ||| | | ||| ||| ||| || || || Sbjct 174674 CCGCACAGGCCATAGCGACGGCCACGCTTGAGA-CGCAGCGCAGTACGGTTGAGCAGGAT 174616 Query 334307 TTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||| | ||||| || || |||||||| || | ||||| ||||| || Sbjct 174615 TTTGGCGCCATAAGCGAGCGAAAATTCGCAGTTGCACAGCTCCTCGCC 174568 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/263 (69%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAG--GACGT--GTCTTTGTACACTTT 298254 |||||||||||||||| | |||||||| | | | ||||| || | || ||| Sbjct 343947 TCGGTCATGATCATCAACTTGCCGTAACGCAACTCGTCGACGTTGGTATAGGT---CTTG 344003 Query 298255 ACCGGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGAT-GC 298313 | | || ||| || ||||| || || | ||||||||||| |||| || |||| || Sbjct 344004 CCGTGCTTCAAGCCC-AGAATCTGCTTAATGGCTGTGATTTCGGCGTTGCTCATGATTGC 344062 Query 298314 TTGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATC 298373 || ||| || || ||||| ||||| || || ||||| || || ||||| || || Sbjct 344063 CTGGTT-GGACGCGTCACGGACGTTCAAAAGCTTGCCACGCAGGGGAAACACACCGTACA 344121 Query 298374 TCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCG 298433 || | |||||||||||| | || | | |||| | | || || || || |||| Sbjct 344122 GATCTCTACCGACCACGGATAAACCGGACAAGACAAGCGCCTTGGCTGAGTCACCTTCCG 344181 Query 298434 TCAGAATGAGAGTGCACATTTTG 298456 |||| ||||| |||||| ||||| Sbjct 344182 TCAGGATGAGTGTGCACTTTTTG 344204 >seq3 Length=1474401 Score = 170 bits (188), Expect = 4e-37 Identities = 456/686 (66%), Gaps = 12/686 (2%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 |||| ||||||||| | |||||| ||||| || || |||| |||||| || ||| || Sbjct 787900 CTCTCGGTCTTCACCTGTGGCATAGCGCCACTGAATGTACTCGTTGGGCGTAGAGTCGAG 787959 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| | ||| || ||||||||||||||||| || || || |||| |||| || || || Sbjct 787960 ATGCTTCTCAATATGGTGGAAAGCATGCTGCGCGACATAGGCAATGCGCAAGTTGGGGTG 788019 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| ||| || | | ||||||||| || || || | ||| ||||||||| Sbjct 788020 TTTCCATACAGAGCCTGTCTGGCCTTCCATTTCACCAGTCAGTAGCTTGATGAGAGTGGA 788079 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT- 333552 || || ||||| || || | || | | | || |||||| || |||| Sbjct 788080 CTTGCCAGCACCGTTGGGACCAATGACGGCGACACGTGAAGACAGCGAGCACT--GCATG 788137 Query 333553 -TCACGTTGTCAAAGATTAGT-TTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAG 333610 | | ||| | || | | || |||| ||||| |||| ||| | || | Sbjct 788138 CTGATGTTCT-TCAGCTGCTTCTTACCCGTGCCCGGGTACTGGAAGTCGACGTTCTTCAT 788196 Query 333611 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 333670 ||| | |||||| || ||||| | ||||||||||||| | || ||||||||||| Sbjct 788197 CTTGACGATGGCGCGCTCCTTGGTCTTGATACCCTCGAGCAGACCCGGCTCGGGGAAGCG 788256 Query 333671 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCAC 333730 ||| || ||| || || | |||||| || | || |||||| || Sbjct 788257 GAACGATAGCTGCGTGTCTTCGAGCGAATAGTAAGCGGCGGCCGAAGGCACCTTCTTGAC 788316 Query 333731 GAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAAT 333790 ||||||||||| || |||||||| ||| ||||| ||| ||||||||||| || Sbjct 788317 AAACTCGGACAGGTTGCCCTTGTAGCGCTTGAGCTTGTAGTTCTTCTCGTAATGGATGAT 788376 Query 333791 AGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTC 333850 | | ||| || ||| ||||| || |||||||| || || || | | | | || Sbjct 788377 ATCAGAGCAGACGTGGTCAAGGAAACCAGAGTCGTGGGAGACGATGATGGATGTGACAGT 788436 Query 333851 CTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGAC-ACAGAAAGATGGTT 333907 ||| || | ||||| ||| || ||||| || || ||| ||| |||||||| Sbjct 788437 CTTGAGACCAAGAAGGTAGTTC--TCGAGCCATGCAACATT-GACAACATCCAGATGGTT 788493 Query 333908 GGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAG 333967 || ||||| ||||| | | | | ||||||| ||||| || || || || || || Sbjct 788494 AGTAGGCTCATCAAGCAACAAGATATCCGCGTTCATTAGCATGGCGCGGGCGAGTGCCAG 788553 Query 333968 TTTCATTTTCCACCCTCCTGAAAGAG 333993 |||||| ||||| || || || |||| Sbjct 788554 TTTCATCTTCCAGCCACCGGACAGAG 788579 >seq12 Length=4600585 Score = 150 bits (166), Expect = 4e-31 Identities = 445/676 (66%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 333321 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 333380 |||||||||| || |||||||| ||||| |||| |||||| || ||| || || | | Sbjct 4525499 TCTTCACCGGTAGCGTAACGCCACTGGATGTACTCGTTGGGGGTAGAGTCCAGGTGCTTC 4525440 Query 333381 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 333440 || || ||||||||||| ||||| || ||||| || | ||| | || ||||||||||| Sbjct 4525439 TCAATATGGTGGAAAGCGTGCTGGGCGACGTAGGCGATACGGAGGTTGGGATGCTTCCAG 4525380 Query 333441 ACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCC 333500 || ||| | | || | | || || || | ||| || || ||| || || Sbjct 4525379 ACGGAACCGACGTCAGACTCGAGCTCACCGGTAAGGAGCTTGATAAGGGTGGACTTGCCA 4525320 Query 333501 GCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTG 333560 ||||| || || | || ||| | || ||||| || |||| | | Sbjct 4525319 GCACCGTTGGGACCGATGACGGCAACACGCGAAGCGAGCGAGCACT--GCATGGAGATGT 4525262 Query 333561 TC-AAAGATTAGTTTTTCCGTA-CCCGGATACTTGAACCCCACACCGCGTAGCTTCATGA 333618 || || | | || || | || || |||| ||| | || | ||| | || Sbjct 4525261 TCTTGAGCTGCTTCTTGGCGGAGCCGGGGTACTGGAAGTCGACGTTCTTCATCTTGACGA 4525202 Query 333619 TGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGG 333678 ||||||| ||||| | |||||||||| || | |||||||||||||| | || || Sbjct 4525201 TGGCACGCTCCTTGGTCTTGATACCCTCAAGCATACCGGGCTCGGGGAATCTGAACTTGA 4525142 Query 333679 TCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGG 333738 || || || ||| | |||||| || | |||| |||||| |||||||||| Sbjct 4525141 ACTGCGAGTCCTCAAGCGAGTAGTAGGCAGCGGCAGCGGGGACCTTCTTGACGAACTCGG 4525082 Query 333739 ACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGC 333798 | || || || ||| ||| ||||| ||| |||||||||||| || | || Sbjct 4525081 AGAGGTTACCACCGTAACGCTTGAGCTTGTAGTTCTTTTCGTAATGGATGATGTCAGAGC 4525022 Query 333799 AAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGT 333858 | || ||| ||||| || |||||||| || || || | | | | ||| ||| | Sbjct 4525021 AGACGTGGTCAAGGAAACCAGAGTCGTGGGAAACGATGATGGAGGTGACGGTCTTCAAAC 4524962 Query 333859 TGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCT 333915 | ||||| ||| || ||||| ||||| ||| || | |||||| || |||| Sbjct 4524961 CAAGGAGGTAGTTC--TCGAGCCAGGCAACGTT-GACAACGTCCAAATGGTTAGTAGGCT 4524905 Query 333916 CGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTT 333975 |||| ||||| || | | ||||||| | ||| ||||| ||||| ||||| ||||| | Sbjct 4524904 CGTCCAGAAGCAGAATGTCGGCGTTCATCAACATGGCACGGGCAAGGGCGAGCTTCATCT 4524845 Query 333976 TCCACCCTCCTGAAAG 333991 |||| || || ||||| Sbjct 4524844 TCCAACCACCAGAAAG 4524829 >seq49 Length=1681262 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 333776 TTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAAT 333835 |||||| |||| || |||||| || || || ||||| || |||||||| || ||||| Sbjct 850356 TTCGTAGTGGAGGATGTGGGTGCACACGGCATCAAGGAAACCCGAGTCGTGGGATACAAT 850415 Query 333836 CACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACAC 333895 || || | || | | | || | | ||| || || ||||||| | ||||| || Sbjct 850416 CAAACAAGTCACATTCGTCTGGCTCACCAGATAGTCTTGCAGCCACTTGACGTTCTGGAC 850475 Query 333896 AGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACG 333955 | | |||||||||||| |||||||| | || | | || || ||||| ||||| Sbjct 850476 ATCCAAATGGTTGGTCGGTTCGTCAAGCAACAGAATATCCGCCTTGGAAAGCATGGCACG 850535 Query 333956 TGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTT 333997 || || | || ||||||||||| || || || ||| |||| Sbjct 850536 CGCGAGCTCAAGCTTCATTTTCCAGCCACCGGACAGA-TGTT 850576 >seq45 Length=2374188 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 59873 GAGGGTGCGTTGAAACTCAAAGAAATCTCGTATATTCACGCAGAGGGGTTCCTGGGAGGC 59932 ||||||||| | || |||| ||||| ||||| || ||| ||||| | |||| || Sbjct 724847 GAGGGTGCGCTCAAGATCAAGGAAATTTCGTACATGCACAGTGAGGGTATTCTGGCTGGT 724906 Query 59933 GAGTTGAAACACGGTCCCCTCGCACTCCTCGACGATAAAATCCCCGTCAT 59982 ||| | || |||||||||||||| ||| ||||||| || || |||||||| Sbjct 724907 GAGCTCAAGCACGGTCCCCTCGCCCTCGTCGACGAGAACATGCCCGTCAT 724956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879307598150