Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq47 212 7e-50 seq45 113 5e-20 seq49 87.8 2e-12 >seq47 Length=1968370 Score = 212 bits (234), Expect = 7e-50 Identities = 1115/1746 (64%), Gaps = 48/1746 (3%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| |||| ||||||| |||| | ||||| | | Sbjct 705140 CGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTC 705199 Query 113657 AACTTGGAGAGTGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | ||| | ||||| | ||| | |||| ||| | ||||||| || || || || Sbjct 705200 AGTTTGCCAAA-GTTGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCAATAAA 705258 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACAT--CCTTCATCTTGATTTCCCACACAGTT 113773 | || || || || ||||| ||||| | || | || | || |||||| || || Sbjct 705259 GGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTG--CGAGAGTTCCCATACGGTC 705316 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCAC---CC 113830 |||||||| || | | || ||||||| ||| |||||||||||| | Sbjct 705317 TTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCATTGTCG 705376 Query 113831 GCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | ||| |||| | ||| | ||| | ||| || || || | ||||||| Sbjct 705377 GACATGATCATG---TTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTG 705433 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | | | || || | || ||||| || | ||| | || | ||| Sbjct 705434 AGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAGGTTG 705493 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | |||||| || || ||||| |||||| |||| || || | || ||||| || ||| Sbjct 705494 GACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCGGC 705553 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 |||||||||| || || |||||| | || | | | ||| |||||||||| Sbjct 705554 ATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAGGGCA 705613 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCC-TGCCACATATCAAACTGGAGGATACCTTG 114129 ||||||| | | || | || | | | | ||| | ||| |||| | || || | Sbjct 705614 GCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCCAGAAGTCATACTGCAAGACGCCCTT 705672 Query 114130 GGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCT 114189 ||| ||||| || || | ||| |||| || || | | |||| | ||| | Sbjct 705673 GGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTGGA 705732 Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249 ||||| || || || || || || |||||||| || || || | | ||||||||| Sbjct 705733 AGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGGCCTC 705792 Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309 | || ||||| | | || ||| ||||| |||| || ||||| | |||||| || Sbjct 705793 GGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACACCTAG 705852 Query 114310 GCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCACGGGATAAAAATTCC 114368 || || || ||||| | ||| || || | || ||| ||| ||||| | || Sbjct 705853 ACCGATGGGACGATGACGCATGTTTGAGCGCTC-AGCTTCAGGCACAGGATAGTAGTTGA 705911 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 | ||||||| | | |||| || || |||||||| | || || | ||||| | Sbjct 705912 TGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTTTGGA 705971 Query 114429 AATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC--GCCAGAT 114485 ||||||| ||| || | |||| |||| | | || | || | ||| |||| || Sbjct 705972 AATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCA--GACTGGCCAAAT 706025 Query 114486 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 114545 | || |||| || ||| | | |||||| | || || ||||| | ||| | Sbjct 706026 TGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTGCTGC 706085 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 ||| || ||||||||||||| || ||||| || ||||||||| |||||||| |||| Sbjct 706086 ACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTACAGCA 706145 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC- 114663 || | || || ||||| ||||| | || | || || | ||||| | || | | | Sbjct 706146 TGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGTGCCT 706205 Query 114664 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 114723 || || ||||| || || || || ||||| | ||| || | ||||||| Sbjct 706206 TGACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAAACTT 706263 Query 114724 TTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 || ||| |||| ||| || |||||||| | ||||||||| | ||||| || Sbjct 706264 CTCGCCCCACACCTCGTGA-AGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCATTCAC 706322 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCC 114842 || ||| || |||||||||||||| || || |||||||| | || |||| || || | Sbjct 706323 CATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAACAGGTCAC 706382 Query 114843 GACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 114901 | |||| || || | | || || || || | |||| || | | |||| Sbjct 706383 GCGCGCGATTCTCCTCCTTGCCGGTG-TTCTTGCGGAGGTCCAGGAACGAGAACACATCC 706441 Query 114902 GCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC-----CTTACGACGACCAGCCTGG 114955 | |||||| || || ||||| | |||| | |||| ||| | | ||| | || Sbjct 706442 GGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTT--GTTG-CCACCTTGA 706498 Query 114956 TTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 115015 | ||||| | || ||| ||| | ||||| ||||| || | ||| || | || | Sbjct 706499 TCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAATAA 706558 Query 115016 CCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAA 115073 ||||| || || ||| |||||| | | || | || | ||||||| | ||| | Sbjct 706559 CCATTGGTACCAGCGATGTACGAGCCGGA--AGCCCGGATCTGGTGGATGTTGAGACCGA 706616 Query 115074 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGA 115133 | || || || ||| || ||||| | ||| | ||| | | ||||| || || | Sbjct 706617 TGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAA 706676 Query 115134 TCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAG 115193 |||| || |||| | | | | |||||| ||||| || || | || ||||| | Sbjct 706677 TCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGG 706736 Query 115194 CGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGGTC 115252 ||||||| ||||| || |||||||| | || || | | ||||| | ||| ||| Sbjct 706737 CGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTGTAAGTC 706795 Query 115253 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 115312 || | | || | || || || ||||||||||| | | || ||||| ||||||| Sbjct 706796 TCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGTGC 706855 Query 115313 TGGGGT 115318 || ||| Sbjct 706856 TGCGGT 706861 >seq45 Length=2374188 Score = 113 bits (124), Expect = 5e-20 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||||||||| |||||||| |||||||| || || ||| ||| || Sbjct 1436327 GCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCA 1436268 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | ||| || || | ||| || || ||||||||||| Sbjct 1436267 GGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATA 1436208 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 ||||||||| || || |||| | |||||||||||| | || |||| | | | Sbjct 1436207 CCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAA-CACACCG--TTTGAGGAGATC 1436151 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 ||||| | ||||| | ||||| |||| ||| || || || Sbjct 1436150 CACTTGAATGCCCATTCGGCCTTCTTCTTGATGCAGGGAAC 1436110 >seq49 Length=1681262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 115121 TAGATCCCGTCGATCGAGTCACC-CTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGG 115179 ||||| || ||||| |||| | || || || || || ||||||| || | || || Sbjct 829974 TAGATGCCCTCGATACTGTCATCTCTCATCTG-GACGAGATAGCAGCTGGAGAGCTGAGG 830032 Query 115180 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACA 115238 | ||||||||||||||||||||||||||||||||| |||| ||| |||||||| Sbjct 830033 ACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTGTGAA-ATATTTTTGGGACA 830091 Query 115239 TCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 115298 | | ||| ||||| | | || ||||||| ||||| || |||| | ||| | Sbjct 830092 TGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCGTGGATGCCGAGGGCGACGC 830151 Query 115299 GCATAAACATGTATTGGGG 115317 |||| | ||||| ||||| Sbjct 830152 GCATGATCATGTGCTGGGG 830170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353234120920