Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq47 149 6e-31 seq23 136 4e-27 seq48 96.9 3e-15 >seq47 Length=1968370 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| || | ||||| | ||| | ||||||||| |||||||||||||| || | | Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| ||| | || || |||||||| || |||||| Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| || | ||| ||| | || ||| Sbjct 80958 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACT 81017 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||||| ||| || || || || ||||| Sbjct 81018 TCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | |||||||| || |||||||||||||| | || |||||| |||| Sbjct 81080 AAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTC 81139 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || || ||||||||| | || || ||||||||||| || || || ||||| || || Sbjct 81140 CTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 81199 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || ||| || || ||||| | |||| || Sbjct 81200 CTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGT 81259 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | || || ||||| || ||||| Sbjct 81260 CTTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | || || | ||| | ||| || || |||||||| ||||| || | Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||| ||| | || || ||||| ||||| || ||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || | | || ||||| ||| || | |||||| | || || Sbjct 80730 ATGCCTTCTTTATCCTGGA-TCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGAC 80788 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| |||| |||||||| ||||| || || || ||||||||||| Sbjct 80789 CTCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 >seq23 Length=2864373 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || | ||| | || || || || || |||||||| || | Sbjct 1572027 ACCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 1571968 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | ||||||||||||||||| || ||||||| ||||||||||| ||||| Sbjct 1571967 GAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 1571908 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||||| ||| || | | ||| | || || Sbjct 1571907 AATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAAC 1571848 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||||||| || || |||||||| ||||| Sbjct 1571847 TTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || ||||||||||| | || |||||| | ||| Sbjct 1571555 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCT 1571496 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| ||| | ||||| |||||||| || |||||||| || || || ||| Sbjct 1571495 TCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 1571436 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || ||| | | || | || ||||| | ||| | |||| Sbjct 1571435 TGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTC 1571376 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | || || |||||||| ||||| || Sbjct 1571375 TTGCCGGTGAGGGTCTTGACGAAAATCTGCATGTT 1571341 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||||||||||||||| | || ||||| | || || |||||| Sbjct 1571774 TGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCGAGCTGC 1571715 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | ||||| ||||||||||| ||||| || || || || ||||| || || Sbjct 1571714 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTC 1571655 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||| || ||| | | || | || || || | || | |||||||| ||| Sbjct 1571654 TGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTC 1571595 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || || |||||||| Sbjct 1571594 AAGGTCTTGACAAAGATTTGCAT 1571572 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || || ||||| || | | |||||| | || Sbjct 1572239 AGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCC 1572180 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || ||||||||||| |||||||| || || || ||| Sbjct 1572179 TCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCT 1572120 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| ||| || | | ||| | || || || | || | |||| Sbjct 1572119 TGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTC 1572060 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || |||||||| ||||| Sbjct 1572059 TTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||| | ||||| || ||||| |||||||| || | Sbjct 1572483 ACCGCCACGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGA 1572424 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| |||||||||||||| ||| | ||||| ||||||||||| ||||| Sbjct 1572423 AAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGG 1572364 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||||| || ||| | | ||| | || || Sbjct 1572363 GATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAAC 1572304 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| ||||| || || || || || ||||| Sbjct 1572303 CTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 >seq48 Length=1814144 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| ||||| || || ||||||||||| || | | |||||| |||| Sbjct 1641590 AGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1641531 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 || ||||||||||| || |||| || ||||||||||| || ||||| ||||| || Sbjct 1641530 TCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCTTCATT 1641475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644493967560