Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq47 223 3e-53 >seq47 Length=1968370 Score = 223 bits (246), Expect = 3e-53 Identities = 607/918 (66%), Gaps = 20/918 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGT-CGTACCTCCTCAAGATGGATGGCAG 93776 ||| | ||||||| |||||| || ||||| | || | || | || ||| | | |||| Sbjct 706932 TACAACTACTTTGGCTTCAAGACGCTGGA-ACGTGCTTATTTGCTGAAGCTCAACGGCAA 706874 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 | || ||||||||||||| || || ||||||| || || | || ||||||||| | || Sbjct 706873 GATTGCCGAGCGACCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTCACGGCGAGGA 706814 Query 93837 CATGCCGAATGTT---TTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGC 93893 || |||| | ||| | ||| || |||| || || | |||| || Sbjct 706813 TAT--CGAAGGCGCCATTGAGA-CTTACAACCTCATGTCTGAGAAATACTTTACCCACGC 706757 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | || |||||||||||||| || ||||| || ||| |||| || || || || | Sbjct 706756 GAGTCCCACCCTGTTCAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCCTGCTTTTTGTT 706697 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA- 94012 ||| | |||| || || || || || | || | || || | | ||| ||| Sbjct 706696 GACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTGAA--AATTTGCTCCCAA 706639 Query 94013 -TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 | || || |||||| || ||||| ||| ||||| | | || || || || Sbjct 706638 ATTTCCAAGACCGCGGGTGGCATCGGTCTCAACATCCACCAGATCCGGGCTTCCGGCTCG 706579 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||||||||||| ||||||||| |||| ||||||||||| || | ||| Sbjct 706578 TACATCGCTGGTACCAATGGTTATTCCAACGGCATCGTGCCTATGCTCCGCGTTTACAAT 706519 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| ||||| || || || ||||| | | | |||| ||||||| |||| Sbjct 706518 AACACGGCTCGCTATGTCGATCAAGGTGGCAACAAGCGCCCGGGTGCTTTCGCCATCTAC 706459 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 ||||||||||||||| |||| ||| | ||| | ||||| || |||||| |||||| Sbjct 706458 CTCGAGCCCTGGCACCCGGATGTGTTCTCGTTCCTGGACCTCCGCAAGAACACCGGCAAG 706399 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | ||||| ||||| || | ||| | || || ||||| ||| Sbjct 706398 GA---GGAGAATCGCGCGCGTGACCTGTTCTATGCCTTATGGATCCCTGATCTTTTCATG 706342 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || ||||| | || | ||||| | || || || | ||| || || || Sbjct 706341 AAGCGTGTCGAAGAGAATGGTGAATGGAGCTTGTTCTGCCCAAGCGAAGCACCAGGTCTT 706282 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 ||| || || || | ||||| || |||| || |||||| | || Sbjct 706281 CACGAGGTGTGGGGCGAGAAGTTTGAGGAGCTGTACCATCAATACGAACGTGAAGGTCGC 706222 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 || | | ||| | | || |||||| ||| || ||| |||| | ||| ||| Sbjct 706221 GCGCGCCAAGTTGTCAAGGCACAGAAGCTCTGGTATGCCATCTTGGAGGCACAAACCGAG 706162 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAGCA 94547 || ||| |||| ||| ||| ||||||| | ||| ||| ||| || ||||||||| | Sbjct 706161 ACAGGTGGCCCCTTCATGCTGTACAAGGACGCGTGT-AACCGCAAATCAAACCAGCAGAA 706103 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 | | || ||||||| || ||||| || || ||||| |||||||| | |||||| Sbjct 706102 CTTGGGCACGATCAAGTGCAGCAATCTCTGTACAGAGATCGTCGAGTACTCCAGTCCGGA 706043 Query 94608 CGAGATTGCTGTGTGTAA 94625 ||| | ||||| || || Sbjct 706042 CGAAGTAGCTGTATGCAA 706025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722896982040