Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq47 131 2e-25 seq23 123 2e-23 seq45 113 4e-20 seq49 82.4 7e-11 >seq47 Length=1968370 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || |||||||| |||| ||||||||| | ||| || || |||||||| ||||| || Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| ||||||||||| ||||| Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| || || ||||| | |||| ||||| | || ||| Sbjct 80958 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACT 81017 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || |||||||||||||| || ||||| |||||||| Sbjct 81018 TCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 107 bits (118), Expect = 2e-18 Identities = 512/801 (64%), Gaps = 17/801 (2%) Strand=Plus/Plus Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815 ||||| |||||||||||||| |||||||| |||| ||| |||||||| || ||| Sbjct 705137 GTGCGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTC 705196 Query 145816 GACA---TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872 | || || | ||| |||||||| | | ||| | |||||| ||||||||| ||| Sbjct 705197 GTCAGTTTGCCAAAGT---TGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCA 705253 Query 145873 ATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCAT-GCACTTTGATTTAATTTCCCATG 145930 || ||||| ||| ||||| || |||||||| || || || ||| | ||||||| Sbjct 705254 AT-AAAGGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTG-CGAGAGTTCCCATA 705311 Query 145931 CGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCAT 145990 |||| || |||| | |||| | | ||| || | ||| ||| | || |||| Sbjct 705312 CGGTCTTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCAT 705371 Query 145991 TTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCT 146050 | |||| || || |||| | || | | | | || ||| || || ||| Sbjct 705372 TGTCGGACATGATCATGTTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCT 705431 Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110 ||| | || |||| || | || || || ||||| | |||||| | |||| || Sbjct 705432 TGAGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAGGT 705491 Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170 || ||| | || ||||| | || ||| || || ||||||| || | || || | Sbjct 705492 TGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCG 705551 Query 146171 GCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGT 146229 ||||| |||||||||| ||||| | || ||| |||| | |||||| || || Sbjct 705552 GCATGGGTGCCACCAGCAGCGAGTTACGCAAGCC-AGTCTGCGCAATCTTGGCCTTGAGG 705610 Query 146230 TTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTG 146289 | ||| | ||| | |||| ||||| | || || ||| || |||| | Sbjct 705611 GCAGCCCAGTCCCATA---GATCGGTGGGTGTCACGTTCCAGAAGTCATACTGCAAGACG 705667 Query 146290 CCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCG 146349 || | || |||||| ||||| | | || ||||||| | || || ||| Sbjct 705668 CCCTTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCG 705727 Query 146350 CAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG 146409 | ||| |||||||| | | ||| |||||||| |||| ||||| || || Sbjct 705728 TTGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTG 705787 Query 146410 GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTAT 146468 ||||| ||| | ||| || || | | || |||||| ||||| ||||| | | Sbjct 705788 GCCTCGGGCGAGTCAAATGGG-TAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGAC 705846 Query 146469 CCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTG 146528 || | ||| | ||| || || | |||| | | |||| | | ||||||| Sbjct 705847 ACCTAGACCGATGGGACGATGACGCATGTTTGAGCGCTCAGCTTCAGGCACAGGATAGTA 705906 Query 146529 GTTGCTGTCGATGATCTTGTT 146549 |||| ||||||| |||||||| Sbjct 705907 GTTGATGTCGATAATCTTGTT 705927 >seq23 Length=2864373 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || ||||| || || || ||||||||| Sbjct 1571570 CCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 1571511 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| || ||||| |||| | ||||||||||| ||||| Sbjct 1571510 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGA 1571451 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || |||||||||| | |||| | ||| | | ||||||| Sbjct 1571450 ATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACT 1571391 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || || || || |||||||||||| Sbjct 1571390 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1571343 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | |||||||| || || || ||||| || Sbjct 1572026 CCACCACGCAGGCGGAGAACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 1571967 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || |||||| | || | |||||||| || ||||| Sbjct 1571966 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 1571907 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| |||||||| | | ||||| | ||| | ||| ||| Sbjct 1571906 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACT 1571847 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||||| || || || ||||||||||| Sbjct 1571846 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || |||||||| |||||||| Sbjct 1571798 CCACCACGCAGGCGGAGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAG 1571739 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | |||||||| || ||||| Sbjct 1571738 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 1571679 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| |||||||||| | || | | ||| | ||| || Sbjct 1571678 ATGCCCTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACC 1571619 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| || || ||||| || ||||| Sbjct 1571618 TCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | || ||||| || || |||||||| ||| Sbjct 1572254 CCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAA 1572195 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | |||||||| || ||||| Sbjct 1572194 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGA 1572135 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| |||||||| | | ||| | | ||| | ||| || Sbjct 1572134 ATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACC 1572075 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||||||||| || || || ||||||||||| Sbjct 1572074 TCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| || | ||| ||| || || ||||| || ||| Sbjct 1572452 GTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCA 1572393 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || ||||| ||||||||||||||| || ||||||||| Sbjct 1572392 GCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTG 1572333 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || ||| | ||| || |||| ||| | || ||||| |||| || Sbjct 1572332 ACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTC 1572273 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1572272 TTGACAAAGATCTGCAT 1572256 >seq45 Length=2374188 Score = 113 bits (124), Expect = 4e-20 Identities = 293/443 (66%), Gaps = 13/443 (3%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 || || |||||| | ||||| || || ||||| |||||||||| ||| ||||| Sbjct 1436173 GCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTTGCC 1436232 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || |||| | || | || | ||||| || || || || ||||||||||| Sbjct 1436233 TCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAACGAGCTC 1436292 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACT-ACAACACTAG 47308 |||||| | |||||||| || |||||| ||||||| |||||| | || || | | Sbjct 1436293 ATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCGCATCTCCGC 1436352 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368 | | | | || |||| || | || || | ||| || |||| || Sbjct 1436353 AAGCAGCCTCCATCTGAGCGTGTCCTCGGT-------ATCATCCGCGAGGCAGTCGAGAT 1436405 Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428 || | |||||| | || ||| |||||| || | | || ||||||||| | Sbjct 1436406 CGAAAAGGAGTTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGACTCT 1436465 Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCA 47487 ||| | | ||||| || |||||||| ||||| || ||||| ||| | ||| || Sbjct 1436466 CATGTGCCAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCT-CGGCATCGACA 1436524 Query 47488 AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 || | ||| | | || || ||||| |||||| ||| || || ||| ||||||||| Sbjct 1436525 AGTTCTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAAGA 1436584 Query 47548 CCAACTTTTTCGAGAAGCGCGTC 47570 ||||||| || |||||||| ||| Sbjct 1436585 CCAACTTCTTTGAGAAGCGTGTC 1436607 >seq49 Length=1681262 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815 || || || || |||||||| |||||||| |||| ||| | ||||||||| || | Sbjct 828106 GTTCGAAGGTAATACATGCCCGTCTTGAGACCCTTCTTCCAAGAGTAAAAGTGCATCGAC 828165 Query 145816 GACATGACCGAG-TACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | || | | | || | || ||||| || |||| ||| | || ||| ||| || || Sbjct 828166 GTCA-GTCGGCCATAGTTTGGCTCGGCAACGAACAGATTCAACGACTGGGACTGGTCGAT 828224 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATG 145908 ||||| ||| ||||||||||||||||| || ||| Sbjct 828225 GAAAGCAGCACGGTCGGCGGCCATGTCAATAATG 828258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500508755760