Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23 131 2e-25 seq47 104 2e-17 >seq23 Length=2864373 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| ||||| || || || ||||| ||||| || |||||| Sbjct 1571573 ATACCACCACGGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCG 1571514 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| ||||| || || || || | || | || ||||| ||||| Sbjct 1571513 GAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGA 1571454 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| || || |||| || | || | | |||||||||||| Sbjct 1571453 GGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGA-CGTTCTCGATAGAGTCGGAAGACTC 1571395 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | || |||||||| || || || || ||||| ||||| Sbjct 1571394 GACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1571344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| ||||| || || || ||||| |||||||| || ||| Sbjct 1572257 ATACCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCG 1572198 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | || | || ||||||||||| Sbjct 1572197 GAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGA 1572138 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||| || || || || | ||| | | ||| || ||||| Sbjct 1572137 GGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCA 1572078 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || |||||||| || || || || ||||| ||||| Sbjct 1572077 ACCTCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| || || ||| || | || Sbjct 1571774 TGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCGAGCTGC 1571715 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | || ||||||||||| || ||||| || || ||||| || || Sbjct 1571714 TTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTC 1571655 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | | |||||| ||||| || ||||| || | || ||||| || Sbjct 1571654 TGCTTGA-CGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGT 1571596 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| |||||||| Sbjct 1571595 CAAGGTCTTGACAAAGATTTGCAT 1571572 >seq47 Length=1968370 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| ||||| || || |||||||| || || || ||||| Sbjct 81063 ATACCACCACGGAGACGAAGCACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCC 81122 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | |||||| || || | |||| || |||||||| ||| Sbjct 81123 GAGAGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGC 81182 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || ||||| || |||| || | |||||| || |||||| Sbjct 81183 GGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCG 81242 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || ||||| || || || || || || ||||| Sbjct 81243 ACTTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | | || ||| | ||||||||| ||||||||||| || || || || Sbjct 80835 ATGCCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCC 80894 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | || || || || | |||| || ||||| || || Sbjct 80895 GAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGA 80954 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || |||| || | ||||| || || || Sbjct 80955 GGAATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCA 81014 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || |||||||| ||||| || ||||| || ||||| Sbjct 81015 ACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/289 (66%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 122831 CGATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaT 122890 ||||| || ||||| || ||||| | ||| ||| | ||| | |||||| || | Sbjct 706942 CGATTTCGGCTACAACTACTTTGGCTTCAAGACGCTGGAACGTGCTTATTTGCTGAAGCT 706883 Query 122891 CGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCA 122950 | | | ||| | ||||| || || || ||| | ||||| || ||| | || | || Sbjct 706882 CAACGGCAAGATTGCCGAGCGACCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTCA 706823 Query 122951 CGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCAC 123010 ||| || |||||| ||| | || |||||| | | |||||| | |||| || || Sbjct 706822 CGGCGAGGATATCGAAGGCGCCATTGAGACTTACAACCTCATGTCTGAGAAATACTTTAC 706763 Query 123011 GCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTT 123070 |||||||||||||| ||||| |||||| || || ||| |||| || || || Sbjct 706762 CCACGCGAGTCCCACCCTGTTCAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCCTGCTT 706703 Query 123071 TTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTG 123119 |||| | ||| || || || || || |||||||||||| || Sbjct 706702 TTTGTTGACCATGAAGGAGGATTCGATTGAAGGCATCTATGAAACTCTG 706654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002923148040