Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq47 188 9e-43 seq45 120 4e-22 seq49 87.8 2e-12 >seq47 Length=1968370 Score = 188 bits (208), Expect = 9e-43 Identities = 1111/1748 (64%), Gaps = 52/1748 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| |||| ||||||| |||| | ||||| | | Sbjct 705140 CGGAGATAGTACATGCCTGTCTTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTC 705199 Query 115618 AACTTGGAGAGTGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | ||| | ||||| | ||| | |||| ||| | ||||||| || || || || Sbjct 705200 AGTTTGCCAAA-GTTGGGTTCGCCAATAAAGATGTTTAGACTTTGGCTCTGGTCAATAAA 705258 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACAT--CCTTCATCTTGATTTCCCACACAGTT 115734 | || || || || ||||| ||||| | || | || | || |||||| || || Sbjct 705259 GGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTG--CGAGAGTTCCCATACGGTC 705316 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCAC---CT 115791 |||||||| || | | || ||||||| ||| ||||| |||||| | Sbjct 705317 TTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGGATGGAGCCATTGTCG 705376 Query 115792 GCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT-- 115849 | | ||| |||| | ||| | ||| | ||| || || || | ||||||| Sbjct 705377 GACATGATCATG---TTCTTGACATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTG 705433 Query 115850 --CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | || | | | || || | || ||||| || | ||| | || | Sbjct 705434 AGCAACCACGGG----TTAACGATTTGGAATTCACCGGCCAAAACGCGACGGGTGTACAG 705489 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| |||||| || || ||||| |||||| |||| || || | || ||||| || Sbjct 705490 GTTGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGT 705549 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 ||||||||||||| || || ||| || | || | | ||| ||||||| Sbjct 705550 CGGCATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAG 705609 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCC-TCCCACATATCAAACTGGAGGATAC 116086 ||| ||||||| | | || | || | | | | ||| | ||| |||| | || | Sbjct 705610 GGCAGCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCCAGAAGTCATACTGCAAGACGC 705668 Query 116087 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 116146 | | ||||||||| || || | ||| | || || || | | |||| | ||| Sbjct 705669 CCTTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGT 705728 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 | ||||| || || || || || || |||||||| || || || | | ||||| Sbjct 705729 TGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTGG 705788 Query 116207 CCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACAC 116266 ||||| || ||||| | | || ||| ||||| |||| || ||||| | ||||| Sbjct 705789 CCTCGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACAC 705848 Query 116267 CGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCACGGGATAAAAA 116325 | || || || || ||||| | ||| || || | || ||| ||| ||||| | Sbjct 705849 CTAGACCGATGGGACGATGACGCATGTTTGAGCGCTC-AGCTTCAGGCACAGGATAGTAG 705907 Query 116326 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 116385 || | ||||||| | | |||| || || |||||||| | || || | |||| Sbjct 705908 TTGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACTTT 705967 Query 116386 TCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC--GCC 116442 | | ||||||| ||| || | |||| |||| | | || | || | ||| ||| Sbjct 705968 TGGAAATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCA--GACTGGCC 706021 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 116502 | ||| || |||| || ||| | | |||||| | || || ||||| | ||| Sbjct 706022 AAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGATTG 706081 Query 116503 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAG 116562 | ||| || ||||||||||||| || ||||| || ||||||||| |||||||| Sbjct 706082 CTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTGTAC 706141 Query 116563 AGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGC 116621 ||||| | || || ||||| ||||| | || | || || | ||| | | || | Sbjct 706142 AGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTCTGT 706201 Query 116622 GGC-TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAA 116680 | | || || ||||| || || || || ||||| | ||| || |||||| Sbjct 706202 GCCTTGACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCCTCAA 706259 Query 116681 AC-TCTTCACCCACAGCCTC-TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCA 116738 || ||| |||||| |||| ||| || |||||||| | ||| ||||| | ||| Sbjct 706260 ACTTCTCGCCCCACA-CCTCGTGA-AGACCTGGTGCTTCGCTTGGGCAGAACAAGCTCCA 706317 Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798 || |||| ||| || || ||||||||||| || || |||||||| | || |||| || Sbjct 706318 TTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAACAG 706377 Query 116799 ATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 || || |||| || || | | || || || || | |||| || | | Sbjct 706378 GTCACGCGCGCGATTCTCCTCCTTGCCGGTG-TTCTTGCGGAGGTCCAGGAACGAGAACA 706436 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914 ||||| |||||| || || ||||| | |||| | ||| ||| ||| | | Sbjct 706437 CATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCGCTTGTTGCCACCTT 706496 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 | | ||||| | ||||| || | ||||| ||||| || | ||| || | || | Sbjct 706497 GATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTGGAAT 706556 Query 116975 GGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 ||||| || || ||| |||||| | | || | || | |||||||| | ||| Sbjct 706557 AACCATTGGTACCAGCGATGTACGAGCC--GGAAGCCCGGATCTGGTGGATGTTGAGACC 706614 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || || ||| || ||||| | ||| | ||| | | ||||| || || Sbjct 706615 GATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGCCTTC 706674 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 ||||| || |||| | | | | |||||| ||||| || || | || ||||| Sbjct 706675 AATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGGTACC 706734 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGTAGG 117211 |||||||| ||||| || |||||||| | || || | | ||||| | ||| | Sbjct 706735 GGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTGTAAG 706793 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 |||| | | | || || || ||||||||||| | | || ||||| ||||||| Sbjct 706794 TCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAACATGT 706853 Query 117272 ATTGGGGT 117279 || ||| Sbjct 706854 GCTGCGGT 706861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 272/418 (65%), Gaps = 5/418 (1%) Strand=Plus/Minus Query 12692 GGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCG 12751 |||||| | |||||| || || || || || || | || | || || | ||| | || Sbjct 977673 GGTGATGTGACGATCGAAACGGCCAGGACGCAGCAACGCCGCATCGAGCACATCCAGTCG 977614 Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 |||||| |||| | || |||| | | | | | ||||| || ||||| || ||| Sbjct 977613 GTTCGTACCCGCCAAAACGACGACGTGCTGGTTGGTGTCGAAACCGTCCATTTCGACCAA 977554 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT---ACCACCCGCACTGCG 12868 ||| || |||| || || || || || || || ||| ||||||| | || Sbjct 977553 GAGCTGGTTGAGCGTACTCTCGCGCTCGTCGTTGCCGCCCATCTGACCACCCTTGCCACG 977494 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 |||||||| |||||||| ||||| | || | || || || || | ||| Sbjct 977493 GGCCTTACCGATCGCGTCAATCTCGTCGACAAAGATAATGCAAGGCGCGTTCTTCTTGGC 977434 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 | |||| | || ||||| | | | ||||||||| ||||||||||| ||||| | Sbjct 977433 AGTGGCAAACAGGTCGCGCACACGCGAAGGACCGACACCGACAAACATCTCGACAAACTC 977374 Query 12989 GGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 || | |||| ||| | | |||||| || || |||||||| | || ||| || | Sbjct 977373 GGAGCCGGACACACT-CAGGAAGGGCACACCGGCCTCACCCGCAGTTGCCTTGGCCAGAA 977315 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | ||||| ||||| || || || | |||| ||| || ||||| ||||||| Sbjct 977314 GAGTCTTACCCGTACCGGGGGGACCAGACAGAATGGCGCCTTTGGGGATGGTGGCACC 977257 >seq45 Length=2374188 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||||||||| |||||||| |||||||| || || ||| |||||| Sbjct 1436328 AGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACC 1436269 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| ||||| |||||||| | ||| || || | ||| ||||||||||||||||| Sbjct 1436268 AGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGAT 1436209 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 ||||||||| || || |||| | |||||| ||||| Sbjct 1436208 ACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAA 1436170 >seq49 Length=1681262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 117082 TAGATCCCATCGATCGAGTCACC-CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||||| || ||||| |||| | || || || || ||| ||||||| || | || || Sbjct 829974 TAGATGCCCTCGATACTGTCATCTCTCATCTG-GACGAGATAGCAGCTGGAGAGCTGAGG 830032 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACA 117199 | ||||||||||||||||||||||||||||||||| |||| ||| |||||||| Sbjct 830033 ACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTGTGAA-ATATTTTTGGGACA 830091 Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259 | | ||| ||||| | | | ||||||| ||||| || |||| | ||| | Sbjct 830092 TGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCGTGGATGCCGAGGGCGACGC 830151 Query 117260 GCATAAACATGTATTGGGG 117278 |||| | ||||| ||||| Sbjct 830152 GCATGATCATGTGCTGGGG 830170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506824226840