Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq47 145 1e-29 seq49 105 1e-17 seq45 98.7 2e-15 >seq47 Length=1968370 Score = 145 bits (160), Expect = 1e-29 Identities = 451/681 (66%), Gaps = 18/681 (3%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || ||||||| ||||| | || ||||| | | | |||||||||||||| ||| Sbjct 705101 TCAACGGTGAACTTGATGGCATCTACTGCAGGGCGAGTGCGGAGATAGTACATGCCTGTC 705160 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || || ||||||| ||| || || | |||||| | |||||||| | |||||| ||| Sbjct 705161 TTGAGACCCTTCTTCCAGCCATAAAAGTGCATACTCGTCAGTTTGCCAAAGTTGGGTTCG 705220 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | || ||||| ||| ||||| ||||| || ||||||||| || || || ||||| Sbjct 705221 CCAATAAAGATGTTTAGACTTTGGCTCTGGTCAAT-AAAGGCGCCGCGGTCAGCTGCCAT 705279 Query 204022 ATTGATAAT-GGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | || || | | | ||||| | ||||| || |||||| | | | || || | || Sbjct 705280 GTCAATGATATGACGT-TGCGAGAGTTCCCATACGGTCTTGTAGAGGGCTTTGAGCTTTT 705338 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | || | | | || ||| ||||| ||||||| ||| | || | || | | Sbjct 705339 CGGGGATAT-TAGGGATGCGCTGGATGGAGCCATTGTCGGACATGA-TCATGTTCTTGAC 705396 Query 204140 -TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 || || ||||| ||||| | ||| ||| | || ||||| | ||| || Sbjct 705397 ATCGTCGTTCCACAGGCCCATGTCAACCAGATCCTTGAGCAACCACGGGTTAACGATTTG 705456 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || |||| || || | |||||| |||||||| ||| | |||||||| || Sbjct 705457 GAATTCACCGGCCAAAACGCGACGGGTGTACAGGTTGGACGTGTAAGGTTCGAAGCATTC 705516 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||| ||| | |||||| | || ||| || |||||||| |||| ||||| ||||| Sbjct 705517 ATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGTCGGCATGGGTGCCACCAGCAGCGAGTT 705576 Query 204319 GCGCACACCGTATTTTTGG--ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG--CAC 204374 |||| || | | | | | | || ||| || | | |||||| ||| | | Sbjct 705577 ACGCAAGCC--AGTCTGCGCAATCTTGGCCTTGAGGGCAGCCCAGTC--CCATAGATCGG 705632 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGACTGGGCTGCCCTTG 204433 ||||| ||||| ||| | ||| |||| |||| | ||||| | ||||||| || | | Sbjct 705633 TGGGTGTCACGTTCCAGAAGTCATACTGCAAGACGCCCTTGGACG-CTGGGCTACCTTCG 705691 Query 204434 TACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAG 204493 || |||| || || | | | || |||| | || || ||| ||| || | Sbjct 705692 TAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTGGAAGCCTCCAGAGCGGCATGG 705751 Query 204494 TACATGGTCTCAAAGATCTGA 204514 || |||||||||||||||||| Sbjct 705752 TAGATGGTCTCAAAGATCTGA 705772 >seq49 Length=1681262 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 203858 ATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGC 203917 ||||| | |||||||||| | ||| || || |||||||| ||||| || ||||||| | Sbjct 828085 ATGGCATCAACGGCAGGCCGGGTTCGAAGGTAATACATGCCCGTCTTGAGACCCTTCTTC 828144 Query 203918 CACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTC 203977 || ||| | |||||| || | |||| || ||| || ||||| | | | ||| Sbjct 828145 CAAGAGTAAAAGTGCATCGACGTCAGTCGGCCATAGTTTGGCTCGGCAACGAACAGATTC 828204 Query 203978 AGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTC 204037 | |||||| ||||||||||||| || || || |||||||| | |||||| | Sbjct 828205 AACGACTGGGACTGGTCGATGAAAGCAGCACGGTCGGCGGCCATGTCAATAATGACACGC 828264 Query 204038 TGCGAAATCTCCCACACCGTCTTGAACA 204065 || || | |||||||| |||||| ||| Sbjct 828265 TGAGACAGTTCCCACACTGTCTTGTACA 828292 >seq45 Length=2374188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||| || ||||||||| ||| || || ||||| || ||||||| ||||||| Sbjct 1436339 AAAAGGAGACAAGCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTG 1436280 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | || || ||||| | |||||| ||||||||||| |||| ||||| | || Sbjct 1436279 AAAGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCA 1436220 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| |||||||| || ||||| || || | | |||| |||| |||| Sbjct 1436219 GAGAAGAAGATACCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCGTTT 1436160 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143 | | | ||||| | |||||||| |||||||| |||||| || Sbjct 1436159 GAG---GAGATCCACTTGAATGCCCATTCGGCCTTCTTCTTGATGCAGGG 1436113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154712967440