Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23 136 9e-27 seq47 127 5e-24 seq46 104 6e-17 seq48 91.5 3e-13 >seq23 Length=2864373 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| |||||||| |||| ||||||||||| | ||| | |||||||| |||||| Sbjct 1572002 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGC 1571943 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| ||||||||||||||||||||| ||| || || || || ||||| Sbjct 1571942 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1571883 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||||| ||||| | ||| | || || || || | ||||| ||||| || || Sbjct 1571882 TGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTC 1571823 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || ||||| || Sbjct 1571822 AAGGTCTTGACGAAAATCTG 1571803 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| ||||| |||||||||||||||| ||||||||| | | || Sbjct 1572476 CGAAGACGGAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTA 1572417 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || |||||||| ||||||||||||||| || || Sbjct 1572416 CGACCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCC 1572357 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||| ||| || | || ||| | | || || || | Sbjct 1572356 TCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGG 1572297 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || ||||| || || Sbjct 1572296 GTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTG 1572259 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| |||||||| | | || | ||||| Sbjct 1572239 AGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCC 1572180 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| |||||||||||||||||| ||| || || || Sbjct 1572179 TCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCT 1572120 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||||| ||| | | ||| | || || || || | || || ||| Sbjct 1572119 TGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTC 1572060 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 1572059 TTGCCGGTCAGCGTCTTGACGAAAATCTG 1572031 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || |||||||| | |||||| |||| | ||| | ||||| Sbjct 1571783 AGAACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCC 1571724 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| ||||||||||||||| || || || || Sbjct 1571723 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCT 1571664 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| ||| || | | ||| | | || || || | ||||| ||| Sbjct 1571663 TGGATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTC 1571604 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| ||||| Sbjct 1571603 TTGCCAGTCAAGGTCTTGACAAAGATTTG 1571575 >seq47 Length=1968370 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || || || ||||||||||| | |||||||| | ||||||| Sbjct 80616 CGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTC 80675 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||| || || ||||| |||||||| ||||| || ||| ||| Sbjct 80676 CGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCT 80735 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||||| |||| || || | || ||| || || || Sbjct 80736 TCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAAT 80795 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||||||||| Sbjct 80796 GTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTG 80833 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||| |||||||| | ||||||||| | | ||| | || || || |||||| Sbjct 80862 TGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGC 80921 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| ||||||||||| || ||| ||| ||||| || |||||||| Sbjct 80922 TTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTG 80981 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| ||||| | | ||| || |||||||| || ||||| || || Sbjct 80982 GCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTC 81041 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || Sbjct 81042 AGAGTCTTCACAAAGATCTG 81061 >seq46 Length=2048726 Score = 104 bits (114), Expect = 6e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||||||||| |||| ||||||||| | | ||| | ||||| Sbjct 962353 AGCACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 962412 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || |||||||| || ||||| || ||||||||||| ||||| ||| |||| Sbjct 962413 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATACCTT 962464 >seq48 Length=1814144 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||||||||| || | ||||||||| | | || | || || Sbjct 1641590 AGCACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1641531 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || |||||||| || ||||| || ||||||||||||||||| ||| ||||| Sbjct 1641530 TCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCTTC 1641478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920859858283