Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq45 131 2e-25 seq23 127 2e-24 seq47 118 1e-21 seq48 86.0 6e-12 >seq45 Length=2374188 Score = 131 bits (144), Expect = 2e-25 Identities = 331/496 (67%), Gaps = 13/496 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || |||| | || || | |||||| || ||||||||| Sbjct 1436600 TTCTCAAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATAAAGTCGAAGGGGTTG 1436541 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| |||| |||||| | | ||||| || | ||| || || ||| Sbjct 1436540 GTAGCCTTGTAGAACTTGTCGATGCCGAGCGAG---ACGAGGAGACGGTCAGCGACAAAC 1436484 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTC 132800 || |||||||| ||||| | |||| | | | || | |||| || |||| || Sbjct 1436483 TCAATGTATTGGCACATGAGAGTCGCGTTCATG-CCGATCAGAGCGACGGGCAAAGCGGT 1436425 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | ||||| |||| || ||| || ||| | || ||| | | Sbjct 1436424 GGTCAGGAACTCCTTTTCGATCTCGACTGCCTCGCGGATGATACCGAGGACACGCTCAGA 1436365 Query 132861 GCTCGGCCG-TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| | |||| | |||| ||| | | |||||||||||| || | || | Sbjct 1436364 TGGAGGCTGCTTGCGG-AGATGCGAGAAAAGGAGACAAGCAAAGTCGGTGTGGAGACCTT 1436306 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | || ||||| |||||||||||||||| || ||||| || || || || |||| Sbjct 1436305 CGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCAGGCATCAGACCACGCTTCTTGA 1436246 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 ||||||| |||| ||| || ||| || ||||||| ||||| || || || ||||| | Sbjct 1436245 GCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATACCCTCCACAGCAGCAAAAGCAA 1436186 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 ||| ||||| | ||| | | || || |||||| | ||||||||||||| Sbjct 1436185 CCAAACGCTCAGCAAAC---ACACCGTTTGAGGAGATCCACTTGAATGCCCATTCGGCCT 1436129 Query 133100 TTTCTTTGACGCACGG 133115 | | |||| ||| || Sbjct 1436128 TCTTCTTGATGCAGGG 1436113 >seq23 Length=2864373 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| |||| || ||| | | Sbjct 1571800 ATGCAGATTTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCATCT 1571859 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 1571860 GACTCTATCGAAAATGTGAAGCAGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 1571919 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| ||||| || || | ||||| ||| ||||||||| Sbjct 1571920 CAGCGTCTCATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 1571979 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||||||||| || || Sbjct 1571980 ATCCAGAAGGAGTCTACTCTGCATTTGGTTCTCCG 1572014 Score = 120 bits (132), Expect = 3e-22 Identities = 162/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | Sbjct 1571340 AAACATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAAGTCGAGTC 1571399 Query 38300 CACCGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 ||||| | || | |||| | || | || || | ||||| ||||| ||||| | Sbjct 1571400 TTCCGACTCTATCGAG--AACG-TCAAGCAGAAGATTCAAGACAAGGAGGGCATTCCTCC 1571456 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||||| ||||| | || ||||| ||| |||| || | ||||||||| ||| Sbjct 1571457 GGATCAGCAGCGCCTCATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGA 1571516 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| ||||| | || || ||| | ||||| ||| Sbjct 1571517 TTACAACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTCCGT 1571559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || |||||| |||| || ||| | | Sbjct 1572256 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTCGAGGTTGAGTCGTCT 1572315 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 1572316 GACTCCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCA 1572374 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| || || || |||||||| Sbjct 1572375 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGTACGCTTTCGGACTACAA 1572434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| || ||| | || || ||| | | ||||| Sbjct 1572435 CATCCAAAAGGAGTCGACCCTCCATCTTGTCCTCCGTCTTCGTGGCGG 1572482 >seq47 Length=1968370 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || ||||| | || || ||||| || || | |||||||| ||||| || Sbjct 80971 GACAAGGAAGGCATTCCTCCAGATCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTCGAG 80912 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| Sbjct 80911 GACGGTCGCACTCTCTCGGACTACAACATTCAAAAGGAATCGACGCTGCATTTGGTGCTG 80852 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 80851 CGCTTACGCGGCGGC 80837 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || || || | || ||||| | | Sbjct 80836 ATGCAAATTTTTGTCAAGACCTTGACAGGCAAGACTATAACATTAGAGGTCGAATCATCT 80777 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| || ||||| || ||||| | |||||| Sbjct 80776 GATACGATCGATAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACCAA 80717 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | |||||||| ||||| || |||| || || | |||||||| Sbjct 80716 CAGCGTCTTATCTTTGCGGGCAAGCAGCTCGAGGACGGACGGACTTTGTCGGACTACAAT 80657 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||||| | |||||||||||||| |||||| || | ||||| Sbjct 80656 ATTCAAAAGGAGTCCACGCTGCATTTGGTCCTGCGTCTGCGTGGCGG 80610 >seq48 Length=1814144 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 38340 AAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGAC 38399 || || || |||||| | ||||| ||||| || |||| ||| ||||| ||||| || ||| Sbjct 1641475 AATGAAGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTCGAGGAC 1641534 Query 38400 GAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | |||||||| ||||||||||| || ||||| |||| || || | ||||| ||| Sbjct 1641535 GGCCGCACCCTTTCGGACTACAACATTCAGAAGGAGTCGACCCTTCACCTTGTGCTCCGT 1641594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172493644160