Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq47 87.8 1e-11 >seq47 Length=1968370 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 518488 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 ||||||| || | ||||| || || || || ||||| | ||| ||| || || Sbjct 1254476 GTCATTATAACGACGGCCAATCAAACGCTTGGCGTCAAAGACAGTGCGGGTAGGGTTG-- 1254533 Query 518548 TGCAGC---TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 518604 ||||| ||||| ||||| ||||| ||||||||| | || || || || | || Sbjct 1254534 -GCAGCGTATTGATTCTTGGCGGCATCACCAATCAGACGCTCCTCATCCGTGAAAGCCAC 1254592 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 || || || || |||||| |||||| || || ||||||||||| || ||||| | Sbjct 1254593 GTACGAGGGCGTGATGCGATGACCTTGGTCGTTGGCAATAATTTCCACGCGTCCATTCTT 1254652 Query 518665 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | ||||| |||||| | ||||| || | ||| |||||||| Sbjct 1254653 CTGCACACCCACACAAGAGTAGGTTGTACCCAGATCGATACCAAT 1254697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780819968458594