Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq47 185 1e-41 seq45 129 7e-25 seq49 93.3 5e-14 >seq47 Length=1968370 Score = 185 bits (204), Expect = 1e-41 Identities = 899/1399 (64%), Gaps = 56/1399 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||||| ||||| || || | ||||| || || || ||||| || | Sbjct 706860 CCGCAGCACATGTTGATGCGTGTGGCTGTGGGTATTCACGGCGAGGATATCGAAGGCGCC 706801 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | | || || | |||||| | || ||||| || Sbjct 706800 ATTGAGACTTACAACCTCATGTCT-GAGAAATACTTTACCCACGCGAGTCCCACCCTGTT 706742 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGGAGG 111789 |||||| ||||| || | || || |||| || || || ||| | | ||||||| Sbjct 706741 CAACGCCGGTACCCCTCGTCCGCAGCTGTCGTCCTGCTTT-TTGTTGACCATGAAGGAGG 706683 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGC--CCAAATCTCAAAGTGGGC 111847 |||| || | ||||| || | ||||| | ||| ||| |||||| || ||| || Sbjct 706682 ATTCGATTGAAGGCATCTATGAAACTCTGAA--AATTTGCTCCCAAATTTCCAAGACCGC 706625 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGT 111905 ||||| ||||| | ||||||| | || | || | | |||||| | | ||| Sbjct 706624 GGGTGGCATCGGTCTCAACATCCACCAGATCCGGGCTTCC--GGCTCGTACATCGCTGGT 706567 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || |||||| | || | || || | || ||||| ||||| | || ||| || ||| Sbjct 706566 ACCAATGGTTATTCCAACGGCATCGTGCCTATGCTCCGCGTTTACAATAACACGGCTCGC 706507 Query 111966 TATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 ||||| | |||| ||| ||| ||| || |||| |||| || ||||| ||| Sbjct 706506 TATGTCGATCAAGGTGGCAACAAGCGCCCGGGTGCTTTCGCCATCTACCTCGAGCCCTGG 706447 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG----GC 112078 ||| ||||| | | |||||| || | || ||| || | |||||| || Sbjct 706446 CACCCGGATGTGTTCTCGTTCCTGGACCTCCGCAAGAACACCGGCAAGGAGGAGAATCGC 706387 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| || || || |||| || | ||||| || ||||| ||||||||| | || || Sbjct 706386 GCG----CGTGACCTGTTCTATGCCTTATGGATCCCTGATCTTTTCATGAAGCGTGTCGA 706331 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 |||| ||| | ||| | || || ||| | | ||||| ||||| ||| | Sbjct 706330 AGAGAATGGTGAATGGAGCTTGTTCTGCCCAAGCGAAGCACCAGGTCTTCACGAGGTGTG 706271 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC 112258 ||| ||| ||||||| | || ||| | ||||| ||| |||| ||| || | Sbjct 706270 GGGCGAGAAGTTTGAGGAGCTGTACCATCAATACGAACGTGAAGGTCGCGCGC--GCCAA 706213 Query 112259 GGTGCCA-GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | || || | | || | | ||| | || || | || | ||||||||||| ||| Sbjct 706212 GTTGTCAAGGCACAGAAGCTCTGGTATGCCATCTTGGAGGCACAAACCGAGACAGGTGGC 706153 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| ||||| ||||||| || || || |||| ||||| | Sbjct 706152 CCCTTCATGCTGTACAAGGACGCGTGTAACCGCAAATCAAACCAGCAGAACTTGGGCACG 706093 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 112435 |||||| | ||| ||||||||||| ||| | || | | ||| | || || || Sbjct 706092 ATCAAGTGCAGCAATCTCTGTACAGAGATCGTCGAGTACTCCAGTC-CGGACGAAGTAGC 706034 Query 112436 TGTGTGTAACCTCGCATCAATC--GCTCTCCCCAAGTATGTGGATCCAGA--GACAAAGA 112491 ||| || || | || || || ||| | |||| | || || ||| | ||| Sbjct 706033 TGTATGCAATTTGGC--CAGTCTGGCTTTGCCCACCTTTG----TCAAGAATCGCGAAG- 705981 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 ||||||| |||| | ||||| ||| || ||| || ||| |||||| Sbjct 705980 TGTTTGATTTCCAAAAGTTGCACGATGTTGTCAAGGTTGTGACGCGCAACTTAAACAAGA 705921 Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608 |||| || | || | || || || ||| ||| || || || ||| | || | Sbjct 705920 TTATCGACATCAACTACTATCCTGTGCCTGAAGCTGAGCG---CTCAAACATGCGTCATC 705864 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 |||| || ||||| |||||| | ||||| || |||| || || | ||| || ||| Sbjct 705863 GTCCCATCGGTCTAGGTGTCAACGGTCTTGCCGATGCCTTTATGTTGATGCGCTACCCAT 705804 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 |||| || ||| || ||| || |||| | || |||||||| || || || |||| Sbjct 705803 TTGACTCGCCCGAGGCCAAGAAACTCAACAGTCAGATCTTTGAGACCATCTACCATGCCG 705744 Query 112729 CTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 112785 |||| ||||| ||| ||| | || | | | ||||| || | || | || | Sbjct 705743 CTCTGGAGGC---TTCCAACGAGCTCGCGGTCCTGAACGGTCCCTACGCGACTTACGAAG 705687 Query 112786 GTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-T 112843 || ||||| || |||||| || | || | ||| | | |||| |||| ||| | | Sbjct 705686 GTAGCCCAGCGTC-CAAGGGCGTCTTGCAGTATGACTTCT-GGAACGTGACACCCACCGA 705629 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 || | ||||||| || ||||||| || | ||| || | |||||| || Sbjct 705628 TCTATGGGACTGGGCTGCCCTCAAGGCCAAGATTGCGCAGACTGGCTTGCGTAACTCGCT 705569 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 || ||||||| ||||| || ||||| || | || || |||| ||||||||||| Sbjct 705568 GCTGGTGGCACCCATGCCGACTGCCTCAACTTCGCAGATTCTGGGCTTCAATGAATGCTT 705509 Query 112964 TGAACCCTACACGACGAAC 112982 ||||| |||||| | ||| Sbjct 705508 CGAACCTTACACGTCCAAC 705490 >seq45 Length=2374188 Score = 129 bits (142), Expect = 7e-25 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 102169 |||||| || || | ||||| || || ||||| | |||||| | |||| || | Sbjct 1436109 AGTTCCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATCTCCTCAAA--CG-G 1436165 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||||||| | | || ||||| ||| |||||||||||||||||||| || Sbjct 1436166 TGTGTTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTC 1436225 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || | | || | ||||||||||||||| ||||| ||||| ||||| ||| ||| Sbjct 1436226 GTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACTTTCAGCAA 1436285 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||| |||||||| || |||||| || ||||| Sbjct 1436286 CGAGCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGC 1436327 >seq49 Length=1681262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/213 (71%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTC 113186 ||||| ||||| | || ||| ||||| ||||| |||||| | | || |||| Sbjct 828314 ATTCCTGATGATCTCAAAAAGCTGTACAAGACAGTGTGGGAACT---GTCTCAGCGTGTC 828258 Query 113187 ATT---GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTA--TGAATC 113241 ||| ||||||||||| || |||| | ||||| || || ||| ||| |||||| Sbjct 828257 ATTATTGACATGGCCGCCGACCGTGCTGCTTTCATCGACCA--GTCCCAGTCGTTGAATC 828200 Query 113242 TATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAG 113300 | ||| | | || | ||| ||| || | || | || |||||| | ||| ||||||| Sbjct 828199 TGTTCGTTGCCGAGCCAAACTATGGCCGA-CTGACGTCGATGCACTTTTACTCTTGGAAG 828141 Query 113301 AAGGGTCTCAAAACGGGGATGTATTACCTCCGA 113333 ||||||||||| ||||| ||||||||||| ||| Sbjct 828140 AAGGGTCTCAAGACGGGCATGTATTACCTTCGA 828108 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||| ||||| || ||| |||||| | | | Sbjct 830170 CCCCAGCACATGATCATGCGCGTCGCCCTCGGCATCCACGGCACAGACATTGATGCGGCT 830111 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| ||||||| ||| |||| ||||| |||||||||||||| Sbjct 830110 ATCGAGACATACAGTTTCATGTCCCAAAAATAT-TTCACACACGCGACACCAACCCTCTT 830052 Query 111731 CAACGCTGGTACA 111743 ||||||||||||| Sbjct 830051 CAACGCTGGTACA 830039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742019795280