Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq47 143 3e-29 seq45 104 3e-17 seq49 102 1e-16 seq46 91.5 2e-13 seq5 89.7 6e-13 seq4 89.7 6e-13 seq1 89.7 6e-13 >seq47 Length=1968370 Score = 143 bits (158), Expect = 3e-29 Identities = 326/478 (68%), Gaps = 17/478 (4%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 |||||||||||| || || || || | || |||| || | ||| | ||||| ||| | Sbjct 977664 ACGATCGAAACGGCCAGGACGCAGCAACGCCGCATCGAGCACATCCAGTCGGTTCGTACC 977605 Query 11562 GGCAATGACTACAA--TGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | || || | ||| || ||||||||||||||||||| | |||||| Sbjct 977604 CGCCAAAACGACGACGTGCTGGTTGG--TGTCGAAACCGTCCATTTCGACCAAGAGCTGG 977547 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT---ACCACC--TGCCGAACGCTTCT 11674 |||| ||| || ||||| |||||| | ||| |||||| |||| ||| || Sbjct 977546 TTGAGCGTACTCTCGCGCTCGTCGTTGCCGCCCATCTGACCACCCTTGCC--ACGGGCCT 977489 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 |||||| ||||||||||| |||| || | || || || ||| | || | || Sbjct 977488 TACCGATCGCGTCAATCTCGTCGACAAAGATAATGCAAGGCGCGTTCTT-CTTGGCAGTG 977430 Query 11735 CGAAA-AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 ||| || || || |||||| | || ||||| || |||||||| || || | | | Sbjct 977429 GCAAACAGGTCGCGCACACGCGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAG 977370 Query 11794 GCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAG 11851 | || ||||| | |||||| ||| | |||||| || | || || | || || |||| Sbjct 977369 CCGGACACACTCAG-GAAGGGCACACCGGCCTCACCCGCAGTTGCCTTG-GCCAGAAGAG 977312 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTC 11911 ||||||||||||| || | ||||| |||| |||||| |||||| ||||||| | Sbjct 977311 TCTTACCCGTACCGGGGGGACCAGACAGAATGGCGCCTTTGGGGATGGTGGCACCCAGGC 977252 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 |||| |||| | |||||||| | |||| |||| || |||||||||||| Sbjct 977251 GCTCGTAGGCAGCAGGGTCTTTGAGGAACTTGACAAACTCCATAATTTCCTCCTTGGC 977194 >seq45 Length=2374188 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || ||||||||||| || ||||| || |||||||| || || Sbjct 1436315 TGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCAGGCATCAGACCA 1436256 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||||||||||| ||| ||||| |||||||| ||||||||| Sbjct 1436255 CGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATACCCTCCACAGCA 1436196 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA-AGGTCG--AGACTTGTCGAACCACTTGAGAGCC 119684 || ||||| | | |||||||||||| | || || | || |||||||| ||| Sbjct 1436195 GCAAAAGCAACCAAACGCTCAGCAAACACACCGTTTGA---GGAGATCCACTTGAATGCC 1436139 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 || | |||||| || |||||||| || Sbjct 1436138 CATTCGGCCTTCTTCTTGATGCAGGGAAC 1436110 >seq49 Length=1681262 Score = 102 bits (112), Expect = 1e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 ||| |||||||| | ||| || |||||| || | || ||||| ||| |||| || Sbjct 828964 TTCGACGGGGTAGTAATTGACATCAATGACCTTGTTCAAGTTTTTCGTGACAATCTTGGT 829023 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 | |||| || || | | ||| || || || |||| | |||||||||||||| || Sbjct 829024 CACAGCATGCAGCTTCTTGAGATCAAAGGTATTGCTCTCTGTGTTGACATATTTGGGCAG 829083 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 ||||| |||||||| ||||| || | ||||| | | | |||||| | ||| || Sbjct 829084 AGCAAGCGACGCAAGGTTGCATACCGCGACTTCGTCAGGGGCAGAGTATTCAATAATCTC 829143 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||| |||| ||||| | | ||| ||| | |||||| || ||||| || ||||| Sbjct 829144 CGTGCACAGATTGGAGCCGGTGATGGTACCAAGGTTCTTTTGGTTCGACTTCTCATTGCA 829203 Query 110406 TGCATC 110411 ||| || Sbjct 829204 TGCGTC 829209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 6682 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 6741 Query 136777 GGGAACA 136783 | || || Sbjct 6742 GTGAGCA 6748 >seq46 Length=2048726 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 16120 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 16179 Query 136777 GGGAACAGCTTTTAGATAT 136795 | || || | || ||||| Sbjct 16180 GTGAGCATCATT--GATAT 16196 >seq5 Length=680425 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 126886 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 126827 Query 136777 GGGAACA 136783 | || || Sbjct 126826 GTGAGCA 126820 >seq4 Length=1091825 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 926264 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 926205 Query 136777 GGGAACA 136783 | || || Sbjct 926204 GTGAGCA 926198 >seq1 Length=4845341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 690468 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGACCCCTGTA 690409 Query 136777 GGGAACA 136783 | || || Sbjct 690408 GTGAGCA 690402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975639252200