Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq47 203 4e-47 seq34 120 4e-22 seq49 102 1e-16 seq45 89.7 6e-13 >seq47 Length=1968370 Score = 203 bits (224), Expect = 4e-47 Identities = 892/1392 (64%), Gaps = 40/1392 (3%) Strand=Plus/Plus Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999 ||| | |||||| ||||| ||||||||||| |||| || || | || ||||| || Sbjct 705490 GTTGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGT 705549 Query 106000 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAG 106059 ||||| ||||||| || || |||||| | || | | | || ||||||| Sbjct 705550 CGGCATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAG 705609 Query 106060 AACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACC 106117 || ||||||| | | || | | ||| |||| |||| | | ||| | || | || Sbjct 705610 GGCAGCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCC-AGAAGTCATACTGCAAGACG 705667 Query 106118 CCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA 106177 || | ||||| || ||| || | ||| | |||| ||| | | || | || Sbjct 705668 CCCTTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCG 705727 Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237 | |||||||| | || || || ||||| |||||||| || || | | |||| Sbjct 705728 TTGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTG 705787 Query 106238 GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACA 106297 || || || ||||||| |||||| ||| ||||| |||| || ||||| | ||| Sbjct 705788 GCCTCGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACA 705847 Query 106298 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAA 106354 || | ||| || || | || ||||| || || ||| ||| ||| || ||||| Sbjct 705848 CCTAGACCGATGGGACGATGACGCATGTTTGAG---CGCTCAGCTTCAGGCACAGGATAG 705904 Query 106355 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGT 106414 | || |||| || | ||||| || || |||| ||| | || || | Sbjct 705905 TAGTTGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAAC 705964 Query 106415 TTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC--GATTGAT 106471 |||| ||||||| | | || | |||| |||| | | || | || || || Sbjct 705965 TTTTGGAAATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCAGACTG-- 706018 Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531 ||||||||||| ||||| || ||| | | |||||| | || |||||||| | Sbjct 706019 GCCAAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGA 706078 Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591 ||| | ||| ||||| ||||| |||| ||||| || ||| ||||| |||||| Sbjct 706079 TTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTG 706138 Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATC 106650 || |||||| |||| || ||||| || |||| || | || || | ||| | | || Sbjct 706139 TACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTC 706198 Query 106651 GGCGGCTGGTACAA--TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 106708 | | || | |||| ||||| || || || || ||||| | ||| || | Sbjct 706199 TGTGCCTTG-ACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCC 706255 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 ||||||| ||| ||| | | ||| ||||||||||| | | ||| ||||| | | Sbjct 706256 TCAAACTTCTCGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTC 706315 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 |||| |||| ||| || || |||||||||||||| || || ||||| | || | || Sbjct 706316 CATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAAC 706375 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 || || | ||| ||| || | || ||| || | || |||||| | Sbjct 706376 AGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAAC 706435 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 | ||||| |||||| ||||| || |||| |||| || ||| | ||| ||| Sbjct 706436 ACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC---GGGCGCTTGTTGCCA 706492 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 |||||| |||||||| || ||| || | ||||| ||||| || | || || | Sbjct 706493 CCTTGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTG 706552 Query 107003 GATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 || | |||||| || || ||| |||||| | || | | | ||||||| | Sbjct 706553 GAATAACCATTGGTACCAGCGATGTACGAGCCGGA--AGCCCGGATCTGGTGGATGTTGA 706610 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 || || || || || ||| || ||||| | || | |||||| ||||||| | Sbjct 706611 GACCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGC 706670 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || || |||||||| ||| | | ||||| |||| |||||| | || | Sbjct 706671 CTTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGG 706730 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCG 107239 |||| || ||||| ||||| || | ||||| | || || | | ||||| || | Sbjct 706731 TACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTG 706789 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | | || || || || ||||| || || | ||||||||||| ||| Sbjct 706790 TAAGTCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAAC 706849 Query 107300 ATGTATTGGGGT 107311 |||| || ||| Sbjct 706850 ATGTGCTGCGGT 706861 >seq34 Length=2752318 Score = 120 bits (132), Expect = 4e-22 Identities = 270/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 |||| ||||| ||| ||||||| | | ||| ||||| ||| | || ||||| ||| Sbjct 1210554 TCTACCAAGCATCTACCTCAGAACTCTATGGAAAGGTAGTCGAGACGCCGCAAAAGGAGA 1210613 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 7022 ||| || || || ||||| || || || ||| | || | | ||| ||||| || Sbjct 1210614 CGACGCCTTTTTATCCACGGTCACCTTATGGCGTCGCCAAACTGTATGGCT-ATTGGATC 1210672 Query 7023 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 7082 | ||| ||||| ||||||||| ||| ||||||| ||| ||| | ||||||||| Sbjct 1210673 ACCGTAAACTACCGGGAGTCTTACAACATGTATGCGTGCAACGGCATCTTATTCAACCAT 1210732 Query 7083 GAATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACCGAGGGTATCAAACA 7141 ||||| || | || || | || ||||| || ||||| || || | | | Sbjct 1210733 GAATCCCCCCGCCGTGGA-CGTACGTTTGTAACCCGCAAGATCACACGGGCTGTGGCCGA 1210791 Query 7142 AAT-CATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 7200 || ||| ||| || ||| | | | | | | || ||||| ||||| || | |||| Sbjct 1210792 TATTCATTTGGGGAGACAAGAA-TGCCTGTATCTTGGCAACATTGACGCGCAGCGCGATT 1210850 Query 7201 GGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCG 7260 |||| || || |||||| |||||| ||||||||||||||| || || || | | | Sbjct 1210851 GGGGCCATGCACGTGACTATATTGAAGGCATGTGGCTCATGCTGCAGCACGATTCACCGG 1210910 Query 7261 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298 | || | ||| | || || |||||||| ||||||||| Sbjct 1210911 AGGACTTTGTGCTTGCGACAGGTGAGACTCATTCAGTG 1210948 >seq49 Length=1681262 Score = 102 bits (112), Expect = 1e-16 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213 |||| ||||| | ||| || | ||||||||| ||||||||||||||||| ||||| Sbjct 830014 AGCAGCTGGAGAGCTGAGGACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTG 830073 Query 107214 TGAACATA-CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 |||| ||| ||||||||| ||||||||| | | | |||||||||| ||| Sbjct 830074 TGAA-ATATTTTTGGGACATGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCG 830132 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||||||||| ||| || ||||| | ||||| ||||| Sbjct 830133 TGGATGCCGAGGGCGACGCGCATGATCATGTGCTGGGG 830170 >seq45 Length=2374188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/222 (69%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||||||||| || || || || || || || || ||| || || Sbjct 1436327 GCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCA 1436268 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| |||||||| | |||| | || | | || || || |||||||||||| Sbjct 1436267 GGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATA 1436208 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAA 117452 ||||||||| ||||| |||| | ||||| || || | || |||| | | Sbjct 1436207 CCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCG----TTTGAGGAGAT 1436152 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||| || | |||||||| |||||||||| || || || || Sbjct 1436151 CCACTTGAATGCCCATTCGGCCTTCTTCTTGATGCAGGGAAC 1436110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980438636760