Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq47 203 4e-47
seq34 120 4e-22
seq49 102 1e-16
seq45 89.7 6e-13
>seq47
Length=1968370
Score = 203 bits (224), Expect = 4e-47
Identities = 892/1392 (64%), Gaps = 40/1392 (3%)
Strand=Plus/Plus
Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 105999
||| | |||||| ||||| ||||||||||| |||| || || | || ||||| ||
Sbjct 705490 GTTGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAAGTTGAGGCAGT 705549
Query 106000 TGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAG 106059
||||| ||||||| || || |||||| | || | | | || |||||||
Sbjct 705550 CGGCATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATCTTGGCCTTGAG 705609
Query 106060 AACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACC 106117
|| ||||||| | | || | | ||| |||| |||| | | ||| | || | ||
Sbjct 705610 GGCAGCCCAGTCCCA-TAGATCGGTGGGTGTCACGTTCC-AGAAGTCATACTGCAAGACG 705667
Query 106118 CCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA 106177
|| | ||||| || ||| || | ||| | |||| ||| | | || | ||
Sbjct 705668 CCCTTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCG 705727
Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237
| |||||||| | || || || ||||| |||||||| || || | | ||||
Sbjct 705728 TTGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTG 705787
Query 106238 GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACA 106297
|| || || ||||||| |||||| ||| ||||| |||| || ||||| | |||
Sbjct 705788 GCCTCGGGCGAGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGACA 705847
Query 106298 CCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAA 106354
|| | ||| || || | || ||||| || || ||| ||| ||| || |||||
Sbjct 705848 CCTAGACCGATGGGACGATGACGCATGTTTGAG---CGCTCAGCTTCAGGCACAGGATAG 705904
Query 106355 AAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGT 106414
| || |||| || | ||||| || || |||| ||| | || || |
Sbjct 705905 TAGTTGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAAC 705964
Query 106415 TTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC--GATTGAT 106471
|||| ||||||| | | || | |||| |||| | | || | || || ||
Sbjct 705965 TTTTGGAAATCAAACACTTCGCGATTCTT----GACAAAGGTGGGCAAAGCCAGACTG-- 706018
Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531
||||||||||| ||||| || ||| | | |||||| | || |||||||| |
Sbjct 706019 GCCAAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTGTACAGAGA 706078
Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591
||| | ||| ||||| ||||| |||| ||||| || ||| ||||| ||||||
Sbjct 706079 TTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACGCGTCCTTG 706138
Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATC 106650
|| |||||| |||| || ||||| || |||| || | || || | ||| | | ||
Sbjct 706139 TACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACCAGAGCTTC 706198
Query 106651 GGCGGCTGGTACAA--TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 106708
| | || | |||| ||||| || || || || ||||| | ||| || |
Sbjct 706199 TGTGCCTTG-ACAACTTGGCG--CGCGCGACCTTCACGTTCGTATTGATGGTACAGCTCC 706255
Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768
||||||| ||| ||| | | ||| ||||||||||| | | ||| ||||| | |
Sbjct 706256 TCAAACTTCTCGCCCCACACCTCGTGAAGACCTGGTGCTTCGCTTGGGCAGAACAAGCTC 706315
Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828
|||| |||| ||| || || |||||||||||||| || || ||||| | || | ||
Sbjct 706316 CATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCATAAGGCATAGAAC 706375
Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888
|| || | ||| ||| || | || ||| || | || |||||| |
Sbjct 706376 AGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTCCAGGAACGAGAAC 706435
Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942
| ||||| |||||| ||||| || |||| |||| || ||| | ||| |||
Sbjct 706436 ACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC---GGGCGCTTGTTGCCA 706492
Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002
|||||| |||||||| || ||| || | ||||| ||||| || | || || |
Sbjct 706493 CCTTGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCACGATGCCGTTG 706552
Query 107003 GATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060
|| | |||||| || || ||| |||||| | || | | | ||||||| |
Sbjct 706553 GAATAACCATTGGTACCAGCGATGTACGAGCCGGA--AGCCCGGATCTGGTGGATGTTGA 706610
Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120
|| || || || || ||| || ||||| | || | |||||| ||||||| |
Sbjct 706611 GACCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGTTTCATAGATGC 706670
Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180
| | || || |||||||| ||| | | ||||| |||| |||||| | || |
Sbjct 706671 CTTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTGCGGACGAGGGG 706730
Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCG 107239
|||| || ||||| ||||| || | ||||| | || || | | ||||| || |
Sbjct 706731 TACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTC-TCAGACATGAGGTTG 706789
Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299
|| ||||| | | | || || || || ||||| || || | ||||||||||| |||
Sbjct 706790 TAAGTCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCACACGCATCAAC 706849
Query 107300 ATGTATTGGGGT 107311
|||| || |||
Sbjct 706850 ATGTGCTGCGGT 706861
>seq34
Length=2752318
Score = 120 bits (132), Expect = 4e-22
Identities = 270/398 (68%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963
|||| ||||| ||| ||||||| | | ||| ||||| ||| | || ||||| |||
Sbjct 1210554 TCTACCAAGCATCTACCTCAGAACTCTATGGAAAGGTAGTCGAGACGCCGCAAAAGGAGA 1210613
Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 7022
||| || || || ||||| || || || ||| | || | | ||| ||||| ||
Sbjct 1210614 CGACGCCTTTTTATCCACGGTCACCTTATGGCGTCGCCAAACTGTATGGCT-ATTGGATC 1210672
Query 7023 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 7082
| ||| ||||| ||||||||| ||| ||||||| ||| ||| | |||||||||
Sbjct 1210673 ACCGTAAACTACCGGGAGTCTTACAACATGTATGCGTGCAACGGCATCTTATTCAACCAT 1210732
Query 7083 GAATCACCGAGACGAGGTGCAGAC-TTTGTCACAAAGAAGATTACCGAGGGTATCAAACA 7141
||||| || | || || | || ||||| || ||||| || || | | |
Sbjct 1210733 GAATCCCCCCGCCGTGGA-CGTACGTTTGTAACCCGCAAGATCACACGGGCTGTGGCCGA 1210791
Query 7142 AAT-CATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 7200
|| ||| ||| || ||| | | | | | | || ||||| ||||| || | ||||
Sbjct 1210792 TATTCATTTGGGGAGACAAGAA-TGCCTGTATCTTGGCAACATTGACGCGCAGCGCGATT 1210850
Query 7201 GGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCG 7260
|||| || || |||||| |||||| ||||||||||||||| || || || | | |
Sbjct 1210851 GGGGCCATGCACGTGACTATATTGAAGGCATGTGGCTCATGCTGCAGCACGATTCACCGG 1210910
Query 7261 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298
| || | ||| | || || |||||||| |||||||||
Sbjct 1210911 AGGACTTTGTGCTTGCGACAGGTGAGACTCATTCAGTG 1210948
>seq49
Length=1681262
Score = 102 bits (112), Expect = 1e-16
Identities = 119/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 107154 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 107213
|||| ||||| | ||| || | ||||||||| ||||||||||||||||| |||||
Sbjct 830014 AGCAGCTGGAGAGCTGAGGACGGTTTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGTG 830073
Query 107214 TGAACATA-CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272
|||| ||| ||||||||| ||||||||| | | | |||||||||| |||
Sbjct 830074 TGAA-ATATTTTTGGGACATGAAACTGTATGTCTCGATAGCCGCATCAATGTCTGTGCCG 830132
Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
|||||||||| ||| || ||||| | ||||| |||||
Sbjct 830133 TGGATGCCGAGGGCGACGCGCATGATCATGTGCTGGGG 830170
>seq45
Length=2374188
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/222 (69%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||||||||| || || || || || || || || ||| || ||
Sbjct 1436327 GCAAAGTCGGTGTGGAGACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCA 1436268
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||| ||||| |||||||| | |||| | || | | || || || ||||||||||||
Sbjct 1436267 GGCATCAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATA 1436208
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAA 117452
||||||||| ||||| |||| | ||||| || || | || |||| | |
Sbjct 1436207 CCCTCCACAGCAGCAAAAGCAACCAAACGCTCAGCAAACACACCG----TTTGAGGAGAT 1436152
Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494
||| || | |||||||| |||||||||| || || || ||
Sbjct 1436151 CCACTTGAATGCCCATTCGGCCTTCTTCTTGATGCAGGGAAC 1436110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980438636760
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