Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq23 163 6e-35
seq47 136 9e-27
seq48 96.9 8e-15
seq46 93.3 9e-14
>seq23
Length=2864373
Score = 163 bits (180), Expect = 6e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| ||||| || |||||||| |||||||| | ||||| | ||||| ||
Sbjct 1571781 AACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTC 1571722
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || || ||||| || || || ||||| ||||| ||||| || ||||||||
Sbjct 1571721 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 1571662
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||||||||||||||||| | ||| || || || || ||||| | |||||
Sbjct 1571661 GATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || || || | ||||||
Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572
Score = 159 bits (176), Expect = 8e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || ||||||||||| || || || |||||||||| || || | ||||||||
Sbjct 1571552 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCC 1571493
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || ||||| || || || || || ||||||||||| || |||||||||
Sbjct 1571492 AACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGA 1571433
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||||||||||| || | ||| ||| || |||||||| || | |||||
Sbjct 1571432 ATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTG 1571373
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGT 195147
|| || | || || ||||| | ||||| | ||||
Sbjct 1571372 CCGGTGAGGGTCTTGACGAAAATCTGCATGTTTGGT 1571337
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || |||||||| || || |||||||| |||| ||| || | ||||| |||
Sbjct 1572236 ACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCG 1572177
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || |||||||| || || ||||| |||||||| || || ||||||||
Sbjct 1572176 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1572117
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||| || || ||||| | ||| || || || ||||| |||| |||||
Sbjct 1572116 ATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTG 1572057
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 1572056 CCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || || ||||| ||||| || ||||| || | ||| || | || || ||
Sbjct 1572464 ACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCA 1572405
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| ||||| ||||| || ||||| |||
Sbjct 1572404 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 1572345
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||||||||||||| ||| || || || || ||||| | |||||
Sbjct 1572344 ATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTG 1572285
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || || || | |||||
Sbjct 1572284 CCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256
>seq47
Length=1968370
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || || |||||||| ||||| || | ||||| | || || |||||||||
Sbjct 80862 TGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGC 80921
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || || || || ||||||||||||||||| ||||||||||| ||
Sbjct 80922 TTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTG 80981
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| || || || ||||| || ||| ||||| | |||| ||||| || |||
Sbjct 80982 GCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTC 81041
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| ||| || || || | |||||
Sbjct 81042 AGAGTCTTCACAAAGATCTGCAT 81064
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || |||||||| |||||||||||||| || | | ||| | || || |||||||||
Sbjct 80634 TGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCGAGCTGC 80693
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || |||||||| || |||||||| || |||||||||||||| || || || ||
Sbjct 80694 TTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGGATCTTG 80753
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || || || || || ||| || || | || | ||||| ||||||
Sbjct 80754 GCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTCTTGCCTGTC 80813
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || || || | ||||||
Sbjct 80814 AAGGTCTTGACAAAAATTTGCAT 80836
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || || || || ||||| |||||||| | || || | || || |||
Sbjct 81084 ACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCG 81143
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || || || || ||||| || || || ||||| || || |||||||| ||||| |||
Sbjct 81144 AGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 81203
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||||||||| || || ||||||||||| | ||||||
Sbjct 81204 ATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTT 81263
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 81264 CCGGTAAGTGTCTTGACGAAGATCTGCAT 81292
>seq48
Length=1814144
Score = 96.9 bits (106), Expect = 8e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || ||||| ||||| || | ||| || | || || |||
Sbjct 1641587 ACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 1641528
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044
|||||||| || ||||| || || || || ||||| || ||||||||||| ||
Sbjct 1641527 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCTTCATT 1641475
>seq46
Length=2048726
Score = 93.3 bits (102), Expect = 9e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||||||||| ||||| || || || ||||| |||| |||||| | ||||| ||
Sbjct 962356 ACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCA 962415
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040
|||||||| || ||||| || || || || || || || ||||| ||||
Sbjct 962416 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATACCTT 962464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109480903453583
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |