Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq23 163 6e-35 seq47 136 9e-27 seq48 96.9 8e-15 seq46 93.3 9e-14 >seq23 Length=2864373 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| ||||| || |||||||| |||||||| | ||||| | ||||| || Sbjct 1571781 AACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTC 1571722 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| || || || ||||| ||||| ||||| || |||||||| Sbjct 1571721 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 1571662 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||||||||||| | ||| || || || || ||||| | ||||| Sbjct 1571661 GATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | |||||| Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||||||||| || || || |||||||||| || || | |||||||| Sbjct 1571552 ACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCC 1571493 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || || || || || ||||||||||| || ||||||||| Sbjct 1571492 AACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGA 1571433 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||| || | ||| ||| || |||||||| || | ||||| Sbjct 1571432 ATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTG 1571373 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGT 195147 || || | || || ||||| | ||||| | |||| Sbjct 1571372 CCGGTGAGGGTCTTGACGAAAATCTGCATGTTTGGT 1571337 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || |||||||| |||| ||| || | ||||| ||| Sbjct 1572236 ACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCG 1572177 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| || || ||||| |||||||| || || |||||||| Sbjct 1572176 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1572117 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| | ||| || || || ||||| |||| ||||| Sbjct 1572116 ATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTG 1572057 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 1572056 CCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| ||||| || ||||| || | ||| || | || || || Sbjct 1572464 ACAAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCA 1572405 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| ||||| ||||| || ||||| ||| Sbjct 1572404 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGA 1572345 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||| ||| || || || || ||||| | ||||| Sbjct 1572344 ATCTTCTGCTTGACGTTCTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTG 1572285 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 1572284 CCAGTCAAGGTCTTGACAAAGATCTGCAT 1572256 >seq47 Length=1968370 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || |||||||| ||||| || | ||||| | || || ||||||||| Sbjct 80862 TGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGC 80921 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || || || || ||||||||||||||||| ||||||||||| || Sbjct 80922 TTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTG 80981 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || || ||||| || ||| ||||| | |||| ||||| || ||| Sbjct 80982 GCCTTGACATTGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTC 81041 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 81042 AGAGTCTTCACAAAGATCTGCAT 81064 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| |||||||||||||| || | | ||| | || || ||||||||| Sbjct 80634 TGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCGAGCTGC 80693 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||| || |||||||| || |||||||||||||| || || || || Sbjct 80694 TTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGGATCTTG 80753 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || || || || || ||| || || | || | ||||| |||||| Sbjct 80754 GCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTCTTGCCTGTC 80813 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | |||||| Sbjct 80814 AAGGTCTTGACAAAAATTTGCAT 80836 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || ||||| |||||||| | || || | || || ||| Sbjct 81084 ACGAGATGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCG 81143 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| || || || ||||| || || |||||||| ||||| ||| Sbjct 81144 AGTTGTTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGA 81203 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| || || ||||||||||| | |||||| Sbjct 81204 ATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTT 81263 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 81264 CCGGTAAGTGTCTTGACGAAGATCTGCAT 81292 >seq48 Length=1814144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || ||||| ||||| || | ||| || | || || ||| Sbjct 1641587 ACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 1641528 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||||| || ||||| || || || || ||||| || ||||||||||| || Sbjct 1641527 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCTTCATT 1641475 >seq46 Length=2048726 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| ||||| || || || ||||| |||| |||||| | ||||| || Sbjct 962356 ACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCA 962415 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 |||||||| || ||||| || || || || || || || ||||| |||| Sbjct 962416 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATACCTT 962464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480903453583