Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq23 120 2e-22 seq47 107 1e-18 >seq23 Length=2864373 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| ||| || |||||||| || || || || | || |||| || Sbjct 1571781 AACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTC 1571722 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 1571721 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 1571662 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||||| |||||| | ||||| || | |||||| |||| ||| || || || Sbjct 1571661 GATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTT 1571602 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| |||||||| |||||| Sbjct 1571601 GCCAGTCAAGGTCTTGACAAAGATTTGCATA 1571571 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||||||||| | || | || || ||||| || || ||||| Sbjct 1572446 TCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAAG 1572387 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||||| |||||| Sbjct 1572386 ATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTC 1572327 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || ||| | |||||| |||| ||| || || || || || | ||||| ||| Sbjct 1572326 TCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACA 1572267 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1572266 AAGATCTGCATA 1572255 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 1572218 TCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 1572159 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || || | Sbjct 1572158 ATAAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTT 1572099 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| ||| | |||||| || | || ||||| || || || || ||||| || Sbjct 1572098 TCAATCGAGTCAGATGACTCAACCTCAAGTGTAATGGTCTTGCCGGTCAGCGTCTTGACG 1572039 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 1572038 AAAATCTGCATA 1572027 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || ||| | || |||| |||| ||| || || ||||| Sbjct 1571534 TCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAG 1571475 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||||| |||||| Sbjct 1571474 ATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTTCTGCTTGACGTTC 1571415 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | ||| || || | || ||||| || || ||||| ||||| || Sbjct 1571414 TCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 1571355 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 1571354 AAAATCTGCATGTT 1571341 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || ||||| || || || || Sbjct 1571990 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAA 1571931 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || || | Sbjct 1571930 ATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCTGCTTCACATTT 1571871 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || ||| | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 1571870 TCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 1571811 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 1571810 AAAATCTGCATA 1571799 >seq47 Length=1968370 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || ||||| ||| | || | || || || ||||| |||||||| Sbjct 81101 TTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGTTGTTTGCCGGCAAA 81160 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| |||| | || |||||||| |||||| ||||| Sbjct 81161 GATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATT 81220 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| || ||| || || | |||||| || ||||| || || ||||| || Sbjct 81221 GTCAATGGTGTCAGAGGACTCGACTTCAAGGGTTATAGTCTTTCCGGTAAGTGTCTTGAC 81280 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 81281 GAAGATCTGCAT 81292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| |||||||| || | || | || || ||||| || || ||||| Sbjct 80873 TTCCTTTTGAATGTTGTAGTCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAA 80932 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || |||||||| |||||| ||||| | Sbjct 80933 GATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTGAC--A 80990 Query 34910 TGCTATCGATT----CACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | |||||| || | ||||| || | || || || || || || ||||||| Sbjct 80991 T--TGTCGATTGTGTCAGACGATTCAACTTCCAACGTAATAGTCTTGCCGGTCAGAGTCT 81048 Query 34966 TCACAAAGATCTGCATA 34982 ||||||||||||||||| Sbjct 81049 TCACAAAGATCTGCATA 81065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633406132872