Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq47 96.9 3e-14 >seq47 Length=1968370 Score = 96.9 bits (106), Expect = 3e-14 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | || || || || |||||| ||||| | | ||||| || Sbjct 1254697 ATTGGTATCGATCTGGGTACAACCTACTCTTGTGTGGGTGTGCAGAAGAATGGACGCGTG 1254638 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||||||||| || |||||| | | | || || || || || |||||||||| Sbjct 1254637 GAAATTATTGCCAACGACCAAGGTCATCGCATCACGCCCTCGTACGTGGCTTTCACGGAT 1254578 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || | | | |||||||||| || || ||||| | ||| || |||||| ||| Sbjct 1254577 GAGGAGCGTCTGATTGGTGATGCCGCCAAGAATCAATACGCTGCCAACCCTACCCGCACT 1254518 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | ||||| || || ||||| ||||| | ||| |||||| | || ||||| || Sbjct 1254517 GTCTTTGACGCCAAGCGTTTGATTGGCCGTCGTTATAATGACAAGGACGTCCAGGCCGAC 1254458 Query 550235 ATGAAGCA 550242 | |||||| Sbjct 1254457 AAGAAGCA 1254450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293408659010