Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017-
04-20] 49 sequences; 30,745,403 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq47 134 1e-26
seq23 132 4e-26
>seq47
Length=1968370
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | ||| || | || ||||| || || ||||| ||||| || ||||| || | |
Sbjct 80838 CCGCCGCGTAAGCGCAGCACCAAATGCAGCGTCGATTCCTTTTGAATGTTGTAGTCCGAG 80897
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | | || || | ||||| || ||||| |||| |||||| ||||| || |||
Sbjct 80898 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGATCTGGAGGA 80957
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || |||||||| || || ||| | || | |||||||||| ||| |||
Sbjct 80958 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCGATTGTGTCAGACGATTCAACT 81017
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | || | || |||||||| | ||| || ||||| ||||||||
Sbjct 81018 TCCAACGTAATAGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 81064
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || ||||| |||||||| || | | ||| | | || ||
Sbjct 80628 ACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGACAAAGTCCGTCCGTCCTCG 80687
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || ||||| || | ||||||||| || |||||||||||||||||||| ||
Sbjct 80688 AGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGG 80747
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| | || | || ||||| | ||| || || | || | || |||
Sbjct 80748 ATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACCTCTAATGTTATAGTCTTG 80807
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || || || || ||||| || ||||||
Sbjct 80808 CCTGTCAAGGTCTTGACAAAAATTTGCATG 80837
>seq23
Length=2864373
Score = 132 bits (146), Expect = 4e-26
Identities = 154/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| || || || || || || || |||||||||| || || | | |||| ||||| ||
Sbjct 1571547 ATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCTTCCAACTG 1571488
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| || | ||||| ||||| || |||||||| || || |||||||| ||
Sbjct 1571487 CTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTT 1571428
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| || || | || | || ||| || | || ||||||||||||| || ||||||||
Sbjct 1571427 CTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTGATGGTCTTGCCGGT 1571368
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473
| || || || || ||||||||| ||
Sbjct 1571367 GAGGGTCTTGACGAAAATCTGCATGTTT 1571340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278163347493
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |