Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq47 107 1e-18 seq23 107 1e-18 >seq47 Length=1968370 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| |||||||| |||||| ||| |||||||||||||| || || Sbjct 80610 CCGCCACGCAGACGCAGGACCAAATGCAGCGTGGACTCCTTTTGAATATTGTAGTCCGAC 80669 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || |||| || | |||||| || ||||| || || |||||||| || | ||| Sbjct 80670 AAAGTCCGTCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGACGCTGTTGGTCAGGCGGA 80729 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || || || ||||| ||| ||| | | | | || || | || ||| Sbjct 80730 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGATGATTCGACC 80789 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||| || || |||||||| ||||| Sbjct 80790 TCTAATGTTATAGTCTTGCCTGTCAAGGTCTTGACAAAAATTTGCAT 80836 >seq23 Length=2864373 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||| ||||||||||| ||| | || | || || Sbjct 1571780 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGGCCATCCTCG 1571721 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || ||||| || |||| || | |||||||||||| Sbjct 1571720 AGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 1571661 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || || | | || || |||| ||| ||||| | || || || || Sbjct 1571660 ATCTTCTGCTTGACGTTCTCAATCGAGTCGGACGACTCAACCTCGAGGGTGATAGTCTTG 1571601 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| || ||||| Sbjct 1571600 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1571572 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || || || |||||||| || || | || Sbjct 1571561 AGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGG 1571502 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || ||||| ||||||| |||| ||||||| Sbjct 1571501 CCATCTTCCAACTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCC 1571442 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | ||| || || | ||| || || | || Sbjct 1571441 TTGTCTTGAATCTTCTGCTTGACGTTCTCGATAGAGTCGGAAGACTCGACTTCAAGAGTG 1571382 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 1571381 ATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1571344 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| || || || | ||| |||| || | |||||| || ||||| Sbjct 1572447 CTCCTTTTGGATGTTGTAGTCCGAAAGCGTACGACCGTCCTCAAGCTGCTTGCCAGCAAA 1572388 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| || | |||||||||||| |||||| || || || Sbjct 1572387 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 1572328 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | || || || || || ||||| || || || Sbjct 1572327 CTCAATGGAGTCAGACGACTCAACCTCGAGGGTGATAGTCTTGCCAGTCAAGGTCTTGAC 1572268 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 1572267 AAAGATCTGCAT 1572256 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || ||||| ||||| ||| | || | || || Sbjct 1572008 ACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1571949 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || ||||| || |||| |||| ||||||||||| Sbjct 1571948 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGG 1571889 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || ||| | | ||| || || | ||| || || | || || || || Sbjct 1571888 ATCTTCTGCTTCACATTTTCGATAGAGTCAGATGACTCAACTTCGAGGGTGATGGTCTTG 1571829 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||||||||| Sbjct 1571828 CCGGTCAAGGTCTTGACGAAAATCTGCAT 1571800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || || |||||||| || || || | || Sbjct 1572245 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGG 1572186 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || ||||| || |||| |||| |||||| Sbjct 1572185 CCATCCTCGAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGAGGAATACCCTCC 1572126 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || ||| | | || || || | ||| ||||| | ||| Sbjct 1572125 TTGTCTTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGATGACTCAACCTCAAGTGTA 1572066 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || ||||||||||| Sbjct 1572065 ATGGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 1572028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937372508827