Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq47 318 1e-81 seq45 156 8e-33 >seq47 Length=1968370 Score = 318 bits (352), Expect = 1e-81 Identities = 1125/1737 (65%), Gaps = 78/1737 (4%) Strand=Plus/Plus Query 212706 TGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAG 212765 || |||||||| || || | | | | |||||| |||||||| ||||||| | || ||| Sbjct 705242 TGGCTCTGGTCAATAAAGGCGCCGCGGTCAGCTGCCATGTCAATGATATGACGTTGCGAG 705301 Query 212766 AGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGC 212825 || ||||| ||||||||| ||| ||||||| | || |||| |||||| ||| Sbjct 705302 AGTTCCCATACGGTCTTGTAGAGGGCTTTGAGCTTTTCGGGGATATTAGGGATGCGCTGG 705361 Query 212826 ACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTG 212882 | || || ||| ||| ||| | | | ||| | |||||||| |||||| || Sbjct 705362 ATGGAGCCATTGTCGGACATGATCATGTTCTTGA-CAT--CGTCGTTCCACAGGCCCATG 705418 Query 212883 GTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTC 212942 |||| ||||| || ||||| || || ||||| ||||| | | || | Sbjct 705419 TCAACCAGATCCTTGAGCAACCACGGGTTAACGATTTGGAATTCACCGGCCAAAACGCGA 705478 Query 212943 CTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCA 213002 | ||| | ||| || ||||| || |||| || || ||| ||||||||||| | | Sbjct 705479 CGGGTGTACAGGTTGGACGTGTAAGGTTCGAAGCATTCATTGAAGCCCAGAATCTGCGAA 705538 Query 213003 GTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATG 213062 || ||| || |||||||| |||||||| || ||| | || || || | || Sbjct 705539 GTTGAGGCAGTCGGCATGGGTGCCACCAGCAGCGAGTTACGCAAGCCAGTCTGCGCAATC 705598 Query 213063 AGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCAC 213122 | | || | |||||||||||| ||| ||| ||| |||||||| Sbjct 705599 TTGGCCTTGAGGGCAGCCCAGTCCCAT-----AGATCGGTGGGTGTC----ACGTTCCAG 705649 Query 213123 ATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCA 213182 | |||| ||||||||| ||| ||| | | ||||| || | ||||| | |||||| || Sbjct 705650 AAGTCATACTGCAAGACGCCCTTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCG 705709 Query 213183 TGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATC 213242 | | || |||||| ||| |||| ||| || || | ||||||||| ||||| ||| Sbjct 705710 TTCAGGACCGCGAGCTCGTTGGAAGCCTCCAGAGCGGCATGGTAGATGGTCTCAAAGATC 705769 Query 213243 TCCCTGTTGAGCTTCTTGGCCTCTGGGG------ACGTGAAGGGCATCATCATGCGTTGG 213296 | |||||||| ||||||||||| || | | | | || |||||| ||| Sbjct 705770 TGACTGTTGAGTTTCTTGGCCTCGGGCGAGTCAAATGGGTAGCGCATCAACAT------A 705823 Query 213297 AACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG 213356 || |||| || || || | ||| || | |||||||| | || | || ||| || Sbjct 705824 AAGGCATCGGCAAGACCGTTGACACCTAGACCGATGGGACGATGACGCATGTTTGA---- 705879 Query 213357 GAGCACTCCTCCAAG----GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGT 213412 | || | || || | || || ||||| |||||| |||||||| | |||||| || Sbjct 705880 GCGCTCAGCTTCAGGCACAGGATAGTAGTTGATGTCGATAATCTTGTTTAAGTTGCGCGT 705939 Query 213413 GGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCAC 213472 | || ||| |||| | || | | | || ||||| | | | | || || Sbjct 705940 CACAACCTTGACAACATCGTGCAACTTTTGGAAATCAAACACTT---CGCGATTCTTGAC 705996 Query 213473 AAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT-GTGT 213531 ||| |||| || | ||||||| ||||| || || || || | | | || | || Sbjct 705997 AAAGGTGGGCAAAGCCAGACTGGCCAAATTGCATACAGCTACTTCGTCCG-GACTGGAGT 706055 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 |||| | |||||| || || || |||||||| ||| ||||||| |||||| ||||||| Sbjct 706056 ACTCGACGATCTCTGTACAGAGATTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTG 706115 Query 213592 ACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | |||||| | || | |||||||| |||||| ||||| || ||||| || | | Sbjct 706116 A-TTTGCGGTTACACGCGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCC 706174 Query 213651 ACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCAC---CCGCCTGACAGCTCCGG 213705 ||| | |||| |||||| | | |||||||| || ||| | | || | Sbjct 706175 TCCA--AGATGGCATACCAGAGCTTCTGTGCCTTGACAACTTGGCGCGCGCGACCTTC-- 706230 Query 213706 GCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765 ||| ||||| || | ||| ||||| | || | | |||||| ||| || || | Sbjct 706231 ACGT----TCGTATTGATGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGTGAAGAC 706286 Query 213766 CCGGACAGGATGCG---GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCA 213822 | || | | || || || | | |||||| || || | ||| ||| | || || Sbjct 706287 CTGG---TGCTTCGCTTGGGCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCTTCA 706343 Query 213823 TGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTC 213882 |||| || || |||| ||| | || ||||||||| | | | |||| ||| | Sbjct 706344 TGAAAAGATCAGGGATCCATAAGGCATAGAACAGGTCACGCGCGCGATTCTCCTCCTTGC 706403 Query 213883 CAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGA 213942 | | ||| ||||| || || || || || | |||| |||||| ||||| | ||||| Sbjct 706404 CGGTGTTCTTGCGGAGGTCCAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGGTAGA 706463 Query 213943 TGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGA 213999 |||| || || |||| || | ||||| || || || || | ||| | ||| Sbjct 706464 TGGCGAAAGCACCCGGGCGCTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTATTGT 706523 Query 214000 AGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGC 214059 | | ||| || | || || | |||||||| | || ||||| || || || ||||||| Sbjct 706524 AAACGCGGAGCATAGGCACGATGCCGTTGGAATAACCATTGGTACCAGCGATGTACGAGC 706583 Query 214060 CGGAGGCCC---TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCA 214116 |||| |||| || ||| | ||| ||| || |||||||| ||| |||||| || Sbjct 706584 CGGAAGCCCGGATCTGGTGG---ATGTTGAGACCGATGCCACCCGCGGTCTTGGAAATTT 706640 Query 214117 TGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCA 214176 || ||| ||| ||| || |||||| | || || || | | | ||| || Sbjct 706641 GGGAGCAAATTTTCAGAGTTTCATAGATGCCTTCAATCGAATCCTCCTTCATGGTCAACA 706700 Query 214177 AGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCAT 214236 | |||||| ||| ||||| || | | | || | |||||| || ||||| || || | Sbjct 706701 AAAAGCAGGACGACAGCTGCGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACTCGCGT 706760 Query 214237 GGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCT 214296 || | | | || | ||| | ||| |||| ||||| | | | ||| || | Sbjct 706761 GGGTAAAGTATTTCTCAGACATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATCCTCGC 706820 Query 214297 TGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCT 214352 ||| || | ||| ||| | ||||| ||||||||| || | || | || || Sbjct 706821 CGTGAATACCCACAGC-CACACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTTGCCG 706879 Query 214353 TTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 ||| | ||| |||| || | || ||||| |||||||| ||||||||| |||| Sbjct 706880 TTGAG---CTTCAGCAAATAAGCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTGTAG 706933 >seq45 Length=2374188 Score = 156 bits (172), Expect = 8e-33 Identities = 339/501 (68%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTG 47917 |||||||||||||| ||||| |||| | ||||| | ||||| ||| |||||||||| Sbjct 1436600 TTCTCAAAGAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATAAAGTCGAAGGGGTTG 1436541 Query 47918 GGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTC 47976 | | || || | | |||| | ||| | | | || || | || ||||| |||| Sbjct 1436540 GTAGCCTTGTAGAACT-TGTCGATGCCGAGCGAGACGAGGAGACGGTCAGCGACAAACTC 1436482 Query 47977 GATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGT 48036 ||||||| ||||||| || ||||||||| || || | ||||||||||| | || Sbjct 1436481 AATGTATTGGCACATGAGAGTCGCGTTCATGCCGATCAGAGCGACGGGCAAAGCGGTGGT 1436422 Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGG-ACTCTG 48095 || |||||||| || |||| || || || | | || | || || || || Sbjct 1436421 CAGGAACTCCTTTTCGATCTCGACTGCCTCGCGGATGAT------ACCGAGGACACGCTC 1436368 Query 48096 AG-----GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAA 48150 || || | ||||| || ||| | | ||| || |||||||| |||| | Sbjct 1436367 AGATGGAGGCTGCTTGCGGAGATGCGAGAAAAGGAGA---CAAGCAAAGTCGGTGTGGAG 1436311 Query 48151 GCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTG 48210 |||||||| || ||||||| ||||| ||| ||||||||||| | || | || Sbjct 1436310 ACCTTCGTCACGCGAGATGAGCTCGTTGCTGAAAGTCAGACCAGGCATCAGACCACGCTT 1436251 Query 48211 TTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAA 48270 |||||||| || || | || || ||||||||||||||||| |||||||| || || || Sbjct 1436250 CTTGAGCCAAAAGATGGAGGCAAACGAGCCAGAGAAGAAGATACCCTCCACAGCAGCAAA 1436191 Query 48271 CGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTC 48330 || | | ||| | || | ||| ||| |||||||| | ||||| || Sbjct 1436190 AGCAACCAAACGCTCAGCAAACACACCGT--TTG-AGGAGATCCACTTGAATGCCCATTC 1436134 Query 48331 TGCCTTCTTCTTGATGCATGG 48351 ||||||||||||||||| || Sbjct 1436133 GGCCTTCTTCTTGATGCAGGG 1436113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532229436160