Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq47 293 4e-74 seq45 181 2e-40 >seq47 Length=1968370 Score = 293 bits (324), Expect = 4e-74 Identities = 851/1293 (66%), Gaps = 48/1293 (4%) Strand=Plus/Plus Query 221351 TTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGC---CTGGGCG 221407 || ||| | || || || ||||| | | |||||||||||| ||| | || || | | Sbjct 705671 TTGGACGCTGGGCTACCTTCGTAAGTCGCGTAGGGACCGTTCAGGACCGCGAGCTCGTTG 705730 Query 221408 CAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG 221467 ||| || | || || || ||||||||||||||||||||| |||||||| ||||| Sbjct 705731 GAAGCCTCC---AGAGCGGCATGGTAGATGGTCTCAAAGATCTGACTGTTGAGTTTCTTG 705787 Query 221468 GCCTCGGGAGAAGTGAAGGGCATA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTAC 221526 |||||||| | ||| || | || |||| || | |||| | ||||| || || | || Sbjct 705788 GCCTCGGGCG-AGTCAAATGGGTAGCGCATCAACATAAAGGCATCGGCAAGACCGTTGAC 705846 Query 221527 TCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCG-GCCGCTTCTGGCACGGGATAAA 221585 || | ||||||||| | || | | |||| | |||| | ||||| ||||| ||||| Sbjct 705847 ACCTAGACCGATGGGACGATGACGCATGTTTG-AGCGCTCAGCTTCAGGCACAGGATAGT 705905 Query 221586 AGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCT 221645 |||||| |||||| | ||||| | ||| | || | || || || || ||| || || Sbjct 705906 AGTTGATGTCGATAATCTTGTTTAAGTTGCGCGTCACAACCTTGACAACATCGTGCAACT 705965 Query 221646 TCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGG 221705 | ||| || ||||| |||| || || ||||| | | | | Sbjct 705966 TTTGGAAATCAAACAC---TTCGC--GATTCTTG----------ACAAAGGTGGGCAAAG 706010 Query 221706 CAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTG 221765 | | ||||||| || || || || || |||||| ||| |||| | |||||||| Sbjct 706011 CCAGACTGGCCAAATTGCATACAGCTACTTCGTCCGGACTGGAGTACTCGACGATCTCTG 706070 Query 221766 TACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAG 221825 ||||||| |||||||||||||| || |||| || | || || || ||||| || | Sbjct 706071 TACAGAGATTGCTGCACTTGATCGTGCCCAAGTTCTGCTGGTTTGATTTGCGGTTACACG 706130 Query 221826 CGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 |||||||||| ||||| ||||| || || ||||| || ||| ||| || | || Sbjct 706131 CGTCCTTGTACAGCATGAAGGGGCCACCTGTCTCGGTTTGTGCCTCCAAGATGGCATACC 706190 Query 221886 AGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTT----TTCATACCCG 221941 |||| | |||| || | | |||| || | | || ||| ||| || Sbjct 706191 AGAGCT-TCTGTGCCT---TGACAACTTG---GCGCGCGCGACCTTCACGTTCGTATTGA 706243 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGG 222000 || ||| |||||||| || || || |||||| || ||||| | | || || Sbjct 706244 TGGTACAGCTCCTCAAACTTCTCGCCCCACACCTCGTGAAGACCTGG-TGCTTCGCTTGG 706302 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 || | || ||||| | || |||| ||| | || |||||| || || |||||||| Sbjct 706303 GCAGAACAAGCTCCATTCACCATTCTCTTCGACACGCTTCATGAAAAGATCAGGGATCCA 706362 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 | || | || || || | | || | ||||||| |||| |||| || | || || Sbjct 706363 TAAGGCATAGAACAGGTCACGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGGAGGTC 706422 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 || ||| || | || | |||||| ||||| || |||| ||| | ||| || || || Sbjct 706423 CAGGAACGAGAACACATCCGGGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCGGGCG 706482 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTAC 222240 |||||||||||| ||||| || | || ||| | | ||| || | || || Sbjct 706483 CTTGTTGCCACCTTGATCGACATAGCGAGCCGTGTTATTGTAAACGCGGAGCATAGGCAC 706542 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTT 222297 | |||||||| ||| ||||| || ||||||| ||| |||| || ||| Sbjct 706543 GATGCCGTTGGAATAACCATTGGTACCAGCGATGTACGAGCCGGAAGCCCGGATCTGGTG 706602 Query 222298 ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGT 222357 | | || | ||||| ||||| ||| || || || || ||| | || ||||| Sbjct 706603 GAT-GTTGAGA--CCGATGCCACCCGCGGTCTTGGAAATTTGGGAGCAAATTTTCAGAGT 706659 Query 222358 GTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 || |||||| || || || |||||||| | | ||| || ||| || ||||||| ||| Sbjct 706660 TTCATAGATGCCTTCAATCGAATCCTCCTTCATGGTCAACAAAAAGCAGGACGACAGCTG 706719 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | | || || |||||| ||||| |||||||| ||||| |||||||| | ||| Sbjct 706720 CGGACGAGGGGTACCGGCGTTGAACAGGGTGGGACTCGCGTGGGTAAAGTATTTCTCAGA 706779 Query 222478 CATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCA 222537 ||| || | ||| ||||| | | | | |||| | || |||||||| || || Sbjct 706780 CATGAGGTTGTAAGTCTCAATGGCGCCTTCGATATCCTCGCCGTGAATACCCACAGCCAC 706839 Query 222538 TCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | ||| |||||| ||| || | ||| || || | ||||| |||| || Sbjct 706840 ACGCATCAACATGTGCTGCGGTCGCTCGGCAATCTTGCCGTTGAGCT--TCAGCAAATAA 706897 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG 222628 | |||||| |||||||| |||||||||||| Sbjct 706898 GCACGTTCCAGCGTCTTGAAGCCAAAGTAGTTG 706930 >seq45 Length=2374188 Score = 181 bits (200), Expect = 2e-40 Identities = 342/505 (68%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| ||||| | ||||||||| | || | || | | Sbjct 1436113 CCCTGCATCAAGAAGAAGGCCGAATGGGCATTCAAGTGGATCTCCT--CAAA-CGGTGTG 1436169 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||||| |||| || ||||||||||||||||| ||||| ||| || |||||| Sbjct 1436170 TTTGCTGAGCGTTTGGTTGCTTTTGCTGCTGTGGAGGGTATCTTCTTCTCTGGCTCGTTT 1436229 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGA 25988 || ||||||| ||||||||| || || ||||| || ||| ||||| |||||| Sbjct 1436230 GCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTG-ACTTTCAGCAACGA 1436288 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||||||| | ||||| |||||||||| || ||||| || || || | | || || Sbjct 1436289 GCTCATCTCGCGTGACGAAGGTCTCCACACCGACTTTGCTTGTCTCCTTTTCTCG---CA 1436345 Query 26049 CTTGCTCCACAAACCTTCTCAA---GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105 |||| ||| | ||| | ||| ||| | |||||||| ||||| || || Sbjct 1436346 ---TCTCCGCAAGCAGCCTCCATCTGAGCGTGTCCTCGGTATCATCCGCGAGGCAGTCGA 1436402 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 |||||| |||||||| | | ||||||||| | Sbjct 1436403 GATCGAAAAGGAGTTCCTGACCACCGCTTTGCCCGTCGCTCTGATCGGCATGAACGCGAC 1436462 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGC 26225 |||||| ||||||||||||||| ||| || |||| ||| || | ||| || ||| Sbjct 1436463 TCTCATGTGCCAATACATTGAGTTTGTCGCTGACCGTCTCCTCGTCTCGCTCGGCATCGA 1436522 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 || |||||| | | ||||| |||||||||||||| | || || | | || || Sbjct 1436523 CAAGTTCTACAAGGCTACCAACCCCTTCGACTTTATGGACATGATCTCTCTCCAGGGCAA 1436582 Query 26286 GACCAACTTCTTTGAAAAGAGGGTC 26310 ||||||||||||||| ||| | ||| Sbjct 1436583 GACCAACTTCTTTGAGAAGCGTGTC 1436607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844231082560