Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syncephalastrum_20racemosum_20[genbank_20GCA_5F002105135.1_202017- 04-20] 49 sequences; 30,745,403 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq34 174 2e-38 >seq34 Length=2752318 Score = 174 bits (192), Expect = 2e-38 Identities = 326/479 (68%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 47800 ACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTG 47859 ||||| || || || | ||||| || ||||| | ||||||| ||||||| || || | Sbjct 1903828 ACAAAGTCCTCGGGCTGGTCTTGCTGGAGCATGAGCCACATACCCTCGACGTAGTCACGA 1903769 Query 47860 GCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCT 47919 ||||| ||||| ||||| ||||||| || || || || | ||||||||| ||| Sbjct 1903768 GCATGACCCCAATCACGCTTGGCATCAATGTTACCAAGGTAGAGACAGTCTTGACGACCA 1903709 Query 47920 TCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTT 47979 | ||| | | || | | ||||| || || ||||| || ||||| | Sbjct 1903708 AGATGGATATCAGCGACGGCGCGGGAGATCTTGCGGGTGACAAAGGTGCGGCCACGGCGG 1903649 Query 47980 GGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAG 48039 || || || || || || || ||||| | ||||| ||||| | || || ||||| ||| Sbjct 1903648 GGGGACTCGTGGTTGAAGAGGATACCGTTGCAGGCGTACATGTCATAGGACTCACGGTAG 1903589 Query 48040 TTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAA 48099 || |||||||| || ||||| || ||||||||||| || || || || |||||| Sbjct 1903588 TTAACGGTGATCCAGTAACCGTAGAGCTTGGCAACACCATAGGGCGAGCGGGGGTAGAAA 1903529 Query 48100 GGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCT 48159 || |||||||| |||| |||||||| |||||||| ||||| || ||| || || Sbjct 1903528 GGCGTGGTCTCCTTCTGGGGAGTCTCGACGACCTTACCGTAAAGCTCGGAGGTCGAGGCC 1903469 Query 48160 TGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGG 48219 || |||| || || | || | | || |||| || || |||| | ||| Sbjct 1903468 TGGTAGAAGCGGACACGGTCCTGGAGACCACATGTGCGGATAGCGTCGAGCAGACGGAGG 1903409 Query 48220 GTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATG 48278 ||||| | ||||| | ||| || ||||||| ||| ||||| || ||||| || || Sbjct 1903408 GTGCCCAGAGCATCGACGTCACCGGTGTACTCGGACATGTCAAAGGAGACCTTGACGTG 1903350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493992384680